Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1704 ATGAAGTGCATATGTGAGAAAGATTCCAGCCTGTGTTCTGCTCATTCAACACCAGCCTGTGTTCTCGGATGCCCACCATGGGGGACTTCTGAATCTGATGTCCAAAATTCATCCAGGACCAAAAACTTGAGCTTTCAAGTGGATGTTCTGCCACAACAATGCCACAAGAGTAAGCCTCTGAGTTTTCAATTTCAAGAACAGGATTCATCGTCAACTCAATCCACCACCAGTCAATCCTTTCCCGAAGTTGGTTCAGCACAATCAGGTCAAGTATCTATCCAGCATAGCAATTCTTCTGCTTGTTCAACACAATGCAGAACTGAGCAGGACAATGCGGTAGGTCACATCAGGTCTTCTATGGGGAGTCTTGATTTTTCCTTCCCTCCTCCAGAACTGGATCACGGTCAATCACTTGCTCCTATTGCATTCCACTATGCCAATCCATCCTACGGAGGCCTACTTGCTGCTGCATATGGTCCACAGTCTAAGCTAATAGGAACTGCTTCGGTTCGGATTCCTCTGCCGCTTGAACTTACAGAAGAACCCATATATGTGAATTCAAAGCAATACCATGCTATTCTGAGGCGTCGACAATATCGAGCTAAACTCGAAGCACATAACAAACTCATCAAAGATCGAAAACCATATCTCCATGAGTCGCGCCATCTACATGCTGTAAAGAGGGCTAGAGGTGCCGGTGGGCGCTTTCTCAATACTAAGAAGCTCCAAGAACCAACGCAATCCTCCTCAGCAAACCACGGCTCGCATATTTCCAGTCATACTCATTTGAATCTGAATGGAAATATGTCACAATCTAACCGGGACGGCGGTTCCATCACCGACTATTCTGATGTCACCTGTGCATCTGGATACCATTCTTACACCGGAAGGGATATGCAGGACTATACCGCAGATAAAGGTGGTGGCGGCGCGAATCATCGCCGTCTATCCGTCCTCATGTAA 963 0.4663 MKCICEKDSSLCSAHSTPACVLGCPPWGTSESDVQNSSRTKNLSFQVDVLPQQCHKSKPLSFQFQEQDSSSTQSTTSQSFPEVGSAQSGQVSIQHSNSSACSTQCRTEQDNAVGHIRSSMGSLDFSFPPPELDHGQSLAPIAFHYANPSYGGLLAAAYGPQSKLIGTASVRIPLPLELTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHAVKRARGAGGRFLNTKKLQEPTQSSSANHGSHISSHTHLNLNGNMSQSNRDGGSITDYSDVTCASGYHSYTGRDMQDYTADKGGGGANHRRLSVLM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1704 320 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 Gene3D - 179 240 - -
Aev10g1704 320 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Aev10g1704 320 MobiDBLite consensus disorder prediction 243 277 - -
Aev10g1704 320 MobiDBLite consensus disorder prediction 65 91 - -
Aev10g1704 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 293 IPR001289 GO:0003700|GO:0006355
Aev10g1704 320 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 23 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1704 Aev-Chr10 19280908 19282901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1704 14 246 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.726 3.51e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aev10g1704 CBFB_NFYA 7.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1704 K08064 - gmx:100500765 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1704 10 19280908 19282901 Aev10g1704 10 19280908 19282901 ECH