Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1676 ATGGATCACTATCACTCCCAATTCGAAACCGACGCTGCTACCTACAATGGCGACAGCAACATCAACCGAGAGGAATTCAACCGAGGGCATGAGCTTCATGCTAATGATGATGAGCAGGATTACGTTAAGCCCTCCTTCAATCGCCACGATTCTTCTTCAGGAAAACTATTCGTTGGAGGCATCTCTTGGGAGACTTCTGAAGAGTCCTTTTTAAAATACTTCAGCAACTTTGGGGAAGTGGTAGATTCAGTGATAATGATGGATAAAACTTCTGGAAGGCCTCGGGGGTTTGGCTTTGTAACATTTGCTGATTCAGCTGTGGCAAATGAAGTTTTGGCAAAGGAGCATACTTTAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTCTCTAGGGAGGACATGGAAGCTACTGGAGTATTCAAAACAAAGAAGATCTTTGTCGGTGGATTACCCCACTTTCTCACAGATGATGAGTTGATGGCATACTTTTCAACTTATGGTAATATTGCTCTGTACCAAATCATGGTAGATCATAATACTGGACGATCTAGAGGCTTTGGATTTGTCACTTTTGTCAGTGAAGATTCAGTTGAAAAGGTTTTTTCAGCAGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCGTAAAAGATTTGGAGTTGATTACAATAGCTCCTCGCAAAGGTCATATGGCGGTTTTTGCAATGGAACGGATGGATCTGGTGGGCATAGTTCTAGAGGTCGTAATCATGGAAAAAGAGTCGTCCCTTATGCAGATCCTGGCATGAATGGGTCATTTGGCCAGTTTGACGGGAGCTATGGTGTAAACTCCGCACCAGCTTATGGTGGCTATAGTGAATATGGTTATGGATATGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTACGGAGCAAACTCTTATGGTAATGCTGCTGGTTATGGTGGCATTGCTATCTATGGAGATGGTAATGCATATGGAAGAGCTGGCAATTTCTATCGCACCAGTGGCTGTGACAGTGATGGTTTTACTCCTGGAAGATATCATCCTTACTGGAGGTGA 1080 0.4361 MDHYHSQFETDAATYNGDSNINREEFNRGHELHANDDEQDYVKPSFNRHDSSSGKLFVGGISWETSEESFLKYFSNFGEVVDSVIMMDKTSGRPRGFGFVTFADSAVANEVLAKEHTLDGRVVEVKRTVSREDMEATGVFKTKKIFVGGLPHFLTDDELMAYFSTYGNIALYQIMVDHNTGRSRGFGFVTFVSEDSVEKVFSAGKIHEIGGKQVEIKRAERKRFGVDYNSSSQRSYGGFCNGTDGSGGHSSRGRNHGKRVVPYADPGMNGSFGQFDGSYGVNSAPAYGGYSEYGYGYGYGGPMYCFGGYGANSYGNAAGYGGIAIYGDGNAYGRAGNFYRTSGCDSDGFTPGRYHPYWR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1676 359 PANTHER BOULE-RELATED 46 357 IPR037366 GO:0003729
Aev10g1676 359 SUPERFAMILY RNA-binding domain, RBD 52 218 IPR035979 GO:0003676
Aev10g1676 359 CDD RRM1_hnRNPA_hnRNPD_like 56 126 - -
Aev10g1676 359 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 46 357 - -
Aev10g1676 359 Gene3D - 140 263 IPR012677 -
Aev10g1676 359 SMART rrm1_1 55 126 IPR000504 GO:0003723
Aev10g1676 359 SMART rrm1_1 144 217 IPR000504 GO:0003723
Aev10g1676 359 MobiDBLite consensus disorder prediction 1 22 - -
Aev10g1676 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 130 IPR000504 GO:0003723
Aev10g1676 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Aev10g1676 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Aev10g1676 359 Gene3D - 52 135 IPR012677 -
Aev10g1676 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1676 Aev-Chr10 19100917 19103367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1676 51 224 Eukaryotic Initiation Factors Gene Family AT1G71770 30.570 1.02e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1676 K12741 - gmx:100818080 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1676 10 19100917 19103367 Aev10g1676 10 19100917 19103367 ECH