Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1543 ATGGATGTTACCTCTCCGGGGCCACATAGTAACACACAAACTGATCAACATCCTTTGCTGATGGAGCAGCCGGAAACTCATAATAGTCATCAGCACATAATTGATGTTACAAGGAATGGTGAAGCTTTATCTGTAGCATCTCACAATGATCAACACTCTGAAATGCTTTTACCAGAGAATGAAGATCAACAGGCTGGGGGCACACAGGACACCTCTCATCAGATTTCTTCGTCCTCTGCATCCGCCCTAAACTCTAGAAATTCCACATTGATGAGAAGAGGTGAGGGGTATGGTCATCGCAGGAGGAGCCCATTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTTTGGGTCAGATCATAGCGTCTATCGTGGTTTTGTCATTGTCAAGGAATGAAAATCCCCGAGCTCCATTGTTTGTGTGGGTTGTGGGTTATGCATCTGGTTGTGCTGCTGTACTTCCTATTCTTTACTGGCGTTTTAGACACCGTAATCAAAGCACCGAACACAATAATTCTCAATCATCTCAAGGATCTTCTGGAAGCAATCTTCCAGAACCTACTCCTTATACTGCCATCTCCGTTGCTCGTGTTTCAGACGAGGAGAATGGTCATGCCACAGAATCAGCCACAACAAACACTATAATTCCTGTAGCCTTTAGTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTGTGGATCTTTGGAGGTCACACTTCTCCTGCTGATGCTCCACAATTGTATAGGTTATGTATAGTGTTTCTTACTTTCAGCTGTATTGGGTATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGCAGAATCCATTAATGCCCTACCAATCTACAAGTTCAAATTGAAGAGCCCTGAAAATGGTGACGATCATGATGTCAATGCACCTCCGGATGAAGGAGGGGTTTTAGCCGCAGGGACAGAAAAGGAGCGTGTGATTTCAGGAGAAGACGCAGTTTGTTGCATTTGCTTGGCGAAATATGCAGATGATGATGAGATTAGGGAGTTACCCTGCTCTCACGTGTTTCACTTGGAGTGTGTTGACAAATGGTTAAAGATAAATGCATCGTGCCCTCTCTGTAAAATTGACGTTGGTATGAGTACTGCAGGTTCACCTTCACCCTGGGACTTGCACTAG 1275 0.4369 MDVTSPGPHSNTQTDQHPLLMEQPETHNSHQHIIDVTRNGEALSVASHNDQHSEMLLPENEDQQAGGTQDTSHQISSSSASALNSRNSTLMRRGEGYGHRRRSPLNSGLWISVELVVTLGQIIASIVVLSLSRNENPRAPLFVWVVGYASGCAAVLPILYWRFRHRNQSTEHNNSQSSQGSSGSNLPEPTPYTAISVARVSDEENGHATESATTNTIIPVAFSSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPADAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATAESINALPIYKFKLKSPENGDDHDVNAPPDEGGVLAAGTEKERVISGEDAVCCICLAKYADDDEIRELPCSHVFHLECVDKWLKINASCPLCKIDVGMSTAGSPSPWDLH* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1543 424 SUPERFAMILY RING/U-box 358 414 - -
Aev10g1543 424 SMART ring_2 366 406 IPR001841 -
Aev10g1543 424 MobiDBLite consensus disorder prediction 61 102 - -
Aev10g1543 424 SMART ringv_2 365 407 IPR011016 GO:0008270
Aev10g1543 424 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Aev10g1543 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 419 - -
Aev10g1543 424 MobiDBLite consensus disorder prediction 62 91 - -
Aev10g1543 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Aev10g1543 424 PANTHER PROTEIN, PUTATIVE-RELATED 1 419 - -
Aev10g1543 424 CDD RING-H2_RNF111_like 365 409 - -
Aev10g1543 424 Pfam Ring finger domain 366 407 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1543 Aev-Chr10 18355590 18357371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1543 1 417 C3H Transcription Factor Family AT1G80400 56.595 1.16e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1543 - - gmx:100819729 709.138