Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1466 ATGAATGTTAGGGAGGGCGCCATGTCTACCAGCTGGCATGCTGCTGCTGCTACCGCCACTGCTATTCCCATTCCCTCCGACGACAACGATCTCGTTCCCTCTGAATGGTCTTCTTCCTCCTGTTCTTCTCTTTTCTCCACCTCTCTCTTCAATTTCTCCTCCGGTAACCCTAGAATCGAGGAAACCCGCGGCCTCATGCATCTCTTCCCCGATCAACCCGATCCCTCCTCCCCTCTCCCCCCTGCACGCAAGCCCCTCCTCTCCGTCGTCGGCGTCCCCAACCACATGACCTACGCCGATTTCTGCCAGTTCTGCGGCTCCTTCATTCACCACATCCTCGAGATGCGCATCGTCAGGATGGACGGAATGGACGATCACTACAGCGTTTTGATTCGCTTCGACGACCAAGACTCCACCGACGGCTTCTTCAAGCATTACAATGGCCGCCGCTTTTCCTCTCTCGAGGTCGAGGTTTGCCGTGTTCTATTCACACTCGATGTCCAGTACACTGGCTCCATTGAACATGCTCAACCTTCCAATGCTAGTTCCACTGAACAGCCTACATGCCCTGTCTGCCTTGAGCGGTTAGATCAAGACACGAGCGGAATCCTCACGACCATATGCAATCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCTGATTCTTCCTGTCCTGTGTGCCGCTATTGCCAGCAGCAAGCTGAAAATTCTATATGTTTTGTTTGTCAAACCACTGAGAATCTTTGGATATGTGTTATATGTGGATTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCATGGAAGTGGAAACTAAGCGTGTATGGGATTATGTTGGGGACAACTATGTTCATAGACTTATTCAGTCTAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGATCATGGGTGCGGAAGTTGCAGCTGTGAAGATAATGCTATGAGTGAAGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGGTACTCAACTTGAAAACCAAAAATTATATTTTGAATCATTGTTACAAGAAGTAAAAGAAGAAACTGAAAGAAAAACTTCTGAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAGCAGAAGATTCAAGCCAAGATTGACAGATGTAATAAAGAGAAGAAATTTCTGGATGAGCTTAACGAGAATCTCATGAAAAATGAGGAGATATGGCCGGCAAAGTTACTTGAGATTGAAGAGAGGGAGAAAAAAGCTCTAAAACTGGGGAAAGATAGAGTAGCTGTCCTGGAAGAGCAGCTTAAAGATCTCATGGTTTGTCTTGATGGTGGGAATGAAGTTAAAGATGGACCTGTCACTGACTCGTCAAACCAATCCTCCGCGAGTGGCTCTGCGCCGGAGAAGAAAGCATAG 1464 0.4617 MNVREGAMSTSWHAAAATATAIPIPSDDNDLVPSEWSSSSCSSLFSTSLFNFSSGNPRIEETRGLMHLFPDQPDPSSPLPPARKPLLSVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMDDHYSVLIRFDDQDSTDGFFKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAENSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSMEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCVHADHGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLGTQLENQKLYFESLLQEVKEETERKTSEAVQKAVSLKQQKIQAKIDRCNKEKKFLDELNENLMKNEEIWPAKLLEIEEREKKALKLGKDRVAVLEEQLKDLMVCLDGGNEVKDGPVTDSSNQSSASGSAPEKKA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1466 487 SMART Zf_UBP_1 239 288 IPR001607 GO:0008270
Aev10g1466 487 Pfam BRCA1-associated protein 2 80 176 IPR011422 -
Aev10g1466 487 PANTHER BRCA1-ASSOCIATED PROTEIN 29 472 - -
Aev10g1466 487 ProSiteProfiles Zinc finger UBP-type profile. 223 316 IPR001607 GO:0008270
Aev10g1466 487 CDD RRM_BRAP2_like 87 168 - -
Aev10g1466 487 Pfam Zn-finger in ubiquitin-hydrolases and other protein 240 299 IPR001607 GO:0008270
Aev10g1466 487 Coils Coil 398 418 - -
Aev10g1466 487 Pfam Ring finger domain 188 229 IPR001841 -
Aev10g1466 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 231 IPR013083 -
Aev10g1466 487 SUPERFAMILY RING/U-box 205 304 - -
Aev10g1466 487 MobiDBLite consensus disorder prediction 467 487 - -
Aev10g1466 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 313 IPR013083 -
Aev10g1466 487 CDD RING-H2_BRAP2 187 230 - -
Aev10g1466 487 ProSiteProfiles Zinc finger RING-type profile. 189 229 IPR001841 -
Aev10g1466 487 SMART ring_2 189 228 IPR001841 -
Aev10g1466 487 MobiDBLite consensus disorder prediction 462 487 - -
Aev10g1466 487 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1466 Aev-Chr10 17873233 17876059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1466 185 229 C3H Transcription Factor Family AT1G72220 48.936 2.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1466 K10632 - gmx:100794688 770