Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1428 ATGAGTAATGGCTGCCAAAAATCCTCAAATTCACGGGGGCAGCCTTACAGTTCTCTTTATTTGAATCCCCTCATTGAGAGTGAGACTGAGACTGAGGTCAGGCACACTCGCAGCTGTAGCGACTATGGCCGCTTAGCCTCGAAAGGCGTCGACTTTGGCTTTGAGGACCCCACCAACAAGGAAAATGCGGTACCCATCAATGGCAATGGCTCTCTGCCTCCTAAGAAGCAGTTGCCGTTCCCAAAGTCCAGGTCTCTATCCTCAGACAGGATTCTGAAGCCCTCCTCTCTCCAGCTCTGCATGCAAATGAACGAGCCCGAAAGGACTTTTGGGTCCAAGCTGTGGAGTGATCCTCTTCACTCATCCACCTCTTTCAATATTTGGGACTACTCTGACTCCGACGCTGCTCCTGCTTCTTCCTGGTCCACTTTGCCCAATAGGTCTTTGATCTGTAGACCCTTGCCTATAGATATTGGAAGGTGCACATGTGTTATTGTGAAGGAGGCAACTCCTCAAGGACTACCTGCCTCTGGGGCTGGTGCCACTCTCTACTCTCTTTATACATATGAAGGTCAGGGACGACAGAATAGGAAACTAGCTGTGGCCCATCACAAGAGGAGGAATGGCAAGTCTCAGTTCACCGTAGCTCAGAATGTGAAAGGACTAATGTCTAGTTCAGATGACAGTTTTCTTGGGACCGTAACAGCCAACCTCGTGGGCTCAAAATACCATATTTGGGATCAGGCATATCATCATCATAATTCCCATACTAAACAACCTAGAGCACCTCTCGCTGTTGTCACGTATATACCTACAATAGCAACATGTACTGGAAGCCACAGAAGCATGAAGGCATATATACCCAAGCATCAATCTATGTCACTGAAGAACACGACCCAGGTACAGCATATCAAAGGATTGCCAACGGATTGGGAAGGGAAATTGGACAGAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAACGGAAGGACAGGACTCAAAATACAAAGATCGGTAAAAAATTTCCAGCTGACTTTAGAGGAAAATGGGAAGCAGACGATCCTACAGCTAGGTAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCTTTGACGGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCACGGTGTAG 1227 0.4662 MSNGCQKSSNSRGQPYSSLYLNPLIESETETEVRHTRSCSDYGRLASKGVDFGFEDPTNKENAVPINGNGSLPPKKQLPFPKSRSLSSDRILKPSSLQLCMQMNEPERTFGSKLWSDPLHSSTSFNIWDYSDSDAAPASSWSTLPNRSLICRPLPIDIGRCTCVIVKEATPQGLPASGAGATLYSLYTYEGQGRQNRKLAVAHHKRRNGKSQFTVAQNVKGLMSSSDDSFLGTVTANLVGSKYHIWDQAYHHHNSHTKQPRAPLAVVTYIPTIATCTGSHRSMKAYIPKHQSMSLKNTTQVQHIKGLPTDWEGKLDRVHQLFSRVPLYNKISKQFELDFRDNGRTGLKIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1428 408 PANTHER TUBBY-RELATED 4 406 - -
Aev10g1428 408 SUPERFAMILY Tubby C-terminal domain-like 138 407 IPR025659 -
Aev10g1428 408 MobiDBLite consensus disorder prediction 56 87 - -
Aev10g1428 408 Pfam Tub family 152 401 IPR000007 -
Aev10g1428 408 PRINTS Tubby superfamily signature 230 254 IPR000007 -
Aev10g1428 408 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Aev10g1428 408 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Aev10g1428 408 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Aev10g1428 408 Gene3D Tubby Protein; Chain A 146 401 IPR025659 -
Aev10g1428 408 MobiDBLite consensus disorder prediction 1 23 - -
Aev10g1428 408 PANTHER TUBBY-LIKE PROTEIN 8 4 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1428 Aev-Chr10 17610140 17612932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1428 66 301 TUB Transcription Factor Family AT1G16070 52.917 6.03e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev10g1428 Tub 4e-43 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1428 K19600 - jre:109010979 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1428 10 17610140 17612932 Aev10g1428 10 17610140 17612932 ECH