Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1380 ATGGCCACAGTACTTTCCACAATAGTTGTTCTTCTCCTATTAAAGTTTTGTGAATGTATATCTTGTGCTCTTCTTGAAACAATTGAGGATGATATTGAAGAAGAAAGAATAAGGACAGCTTTAATGGTTAGATCTTCATTGAGATACCAAGTTGCTTTGAATGATACCAATTCTCTTGATGAGATGAAATCACAAAAACTTTTGCCACCCCATAATTTTATTTATGGTGGAGAAGATGATTATGGGTTAAGATCATCATTATTGTATAGTGATTGTGTGATTTGCTTGGAGAATTTCACAATTGGTGAGTCTTGTCAAGTGTTGCCAATGTGCAATCATGTCTTCCATTCAGATTGCATAGAGCTTTGGTTGAAGGAGAATAGCACATGCCCTGTTTGTAGAAATTGTTTGTTAGACTCATAG 423 0.3499 MATVLSTIVVLLLLKFCECISCALLETIEDDIEEERIRTALMVRSSLRYQVALNDTNSLDEMKSQKLLPPHNFIYGGEDDYGLRSSLLYSDCVICLENFTIGESCQVLPMCNHVFHSDCIELWLKENSTCPVCRNCLLDS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1380 140 SUPERFAMILY RING/U-box 91 137 - -
Aev10g1380 140 SMART ring_2 92 133 IPR001841 -
Aev10g1380 140 PANTHER RING-H2 FINGER PROTEIN ATL3-LIKE 4 139 - -
Aev10g1380 140 Pfam Ring finger domain 91 134 IPR001841 -
Aev10g1380 140 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 139 - -
Aev10g1380 140 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Aev10g1380 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1380 Aev-Chr10 17195807 17196229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1380 91 135 C3H Transcription Factor Family AT4G30370 53.333 8.88e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1380 - - pvu:PHAVU_005G065200g 107.071