Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1343 ATGGACACATTCTACCACCACTTTGACAACACCGATTCCCATCTGCCACCTGGTTTCCGGTTCCACCCAACAGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTTGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAACTCCCTGAGAAAGCAAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTAAGGGACAGGAAATACCCAACAGGGCTGAGGACAAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACAGGCAAAGACAGAGAGATTTATAGCTCAAAATCTTGTTCTTTGGTTGGGATGAAGAAGACTCTGGTTTTCTACAGAGGAAGAGCACCCAAAGGAGAGAAGAGTAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTACCTCTCTAGGAGCTCCAAGGACGAGTGGGTCATATCTCGTGTGTTCCAGAAGACCACCACCGGAGGTGGCGGTGGCGTTTCAGCCACTTCCGCCGCCGGCGGCGGTGGTGGTGGTTCAAAGAAGACAAGAATGAGCACAACAACCACAACAACTAATTCCAACACCACAATGAGTCTCTGCCCTGAACCAAGCTCTCCCTCTTCGGTTTACCTTCCACCGCTTCTTGACTCATCGCCGTACACCACCACCGGCTCCGCTGCATCTGCCGCCGCGTACGGCGGCGGAGGCCAGAGCTGCTCCTATGACAGCACCAACACCAACACAAGGGAGCACGTGTCCTGTTTCTCCACATTCTCTAACAGTTTCGCCAATGGGGTCTTCGATCTTGCTCCTATGGATTCTTTTGCTCGATTTCAGAGAAACACCAATAACAACAATAACAACAACGTTGGTGTCTCTGTTTTTCCTAGCCTCAGGTCACTCCAAGACAACCTTAACATGCCTTTCTTTTTCTCTCCGGCGGTGGCTCAGCCCCTCCACGGCGGTGACTTCACCGCCGCCGGGATATGGCCGGTTCCGGAGGATCAGAAGGTGGCCGACGGCGGCGCCGGCATGGGCTTGGGAGCTTCCGAGCTTGATTGCATGTGGGGTTATTGA 1107 0.5212 MDTFYHHFDNTDSHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKSCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGVSATSAAGGGGGGSKKTRMSTTTTTTNSNTTMSLCPEPSSPSSVYLPPLLDSSPYTTTGSAASAAAYGGGGQSCSYDSTNTNTREHVSCFSTFSNSFANGVFDLAPMDSFARFQRNTNNNNNNNVGVSVFPSLRSLQDNLNMPFFFSPAVAQPLHGGDFTAAGIWPVPEDQKVADGGAGMGLGASELDCMWGY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1343 368 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Aev10g1343 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 365 - -
Aev10g1343 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 6 365 - -
Aev10g1343 368 Gene3D NAC domain 24 171 IPR036093 GO:0003677|GO:0006355
Aev10g1343 368 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Aev10g1343 368 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Aev10g1343 368 MobiDBLite consensus disorder prediction 190 216 - -
Aev10g1343 368 MobiDBLite consensus disorder prediction 170 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1343 Aev-Chr10 16918324 16920384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1343 1 368 NAC Transcription Factor Family AT5G53950 50.985 2.44e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aev10g1343 NAM 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1343 - - cam:101501114 452.595