Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1291 ATGTCTCTAAGGAGGGTCTTTCGTTCGCGCAAGTTTTCGAGGTCGCTCAATGAGGCAGGTGGTGGTGGTGGGGGTGCCGCCGTCGGCGGAGACGGTGACAGGCGAGGGTGCGGGGACTCGGCGGCGGATCTAGGGCAGGGGGATGGTGGGAATGCTTGGTCGGGGATGTTGCCGGAGCTGTTGGGGGAGATCATACGGAGGGTGGATGCGGAGGAGGAGCAGTGGCCGCAGCGGCAGAACGTCGTTTCGTGTGCGTGCGTTTGCAAGCGGTGGAGGGACACCACGCGCGAGATCGTCAGGTCACCCTCTCACAACGGAAAAATCACGTTCCCATCTTGCCTCAAGAAGCCAGGTCCACGTGACCTTCCTCACCAATGTCTTATAAAGCGGAATAAAAAGACGTCAACATTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTTTGCTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAATTTCACAATCTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCCAGTGGCAGGGCTAGCCGCCGTTTTGCCAGCAAGCAGATAAGTCCTCAGGTTCCTGCTGGAAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTCTGCTCAATGAAGTGTCCTGTCCCACCATTGGAAGAAAGTACAGATAACACGTCACTGGACGGCCAAAAGATGCACAGTAAAGAACACGCCGCCTCTGGCTTCACAGTCTTGAAGAACAAAGCACCAAGATGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGCGTGACGGTAGCATCAGTGAAGAACTTTCAGCTGGTCGCAACGGTGGACCAAAGCCAACCGGGAGGGAAAGGAGACGAGGAAACGGTTCTCCTCCAGTTTGGGAAAGTAGGAGATGATACTTTCACCATGGATTATAGGCAGCCTTTATCTGCCTTTCAAGCATTTGCCATCTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1149 0.5187 MSLRRVFRSRKFSRSLNEAGGGGGGAAVGGDGDRRGCGDSAADLGQGDGGNAWSGMLPELLGEIIRRVDAEEEQWPQRQNVVSCACVCKRWRDTTREIVRSPSHNGKITFPSCLKKPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSMKCPVPPLEESTDNTSLDGQKMHSKEHAASGFTVLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1291 382 PANTHER TUBBY-RELATED 41 382 - -
Aev10g1291 382 MobiDBLite consensus disorder prediction 18 50 - -
Aev10g1291 382 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Aev10g1291 382 Gene3D Tubby Protein; Chain A 109 382 IPR025659 -
Aev10g1291 382 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Aev10g1291 382 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Aev10g1291 382 Pfam F-box domain 54 99 IPR001810 GO:0005515
Aev10g1291 382 Pfam Tub family 114 377 IPR000007 -
Aev10g1291 382 SUPERFAMILY Tubby C-terminal domain-like 102 382 IPR025659 -
Aev10g1291 382 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 41 382 - -
Aev10g1291 382 ProSitePatterns Tub family signature 2. 367 382 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1291 Aev-Chr10 16496083 16499979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1291 49 382 TUB Transcription Factor Family AT1G53320 78.824 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev10g1291 Tub 3.4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1291 K19600 - gmx:100801919 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1291 10 16496083 16499979 Aev10g1291 10 16496083 16499979 ECH