Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1170 ATGGCTGCGGTTGCTGAGATTTCAGTTGATTCCAACAACAAAATGGAATCAAAGGGAAAACCTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCCAAGGAGTTCTTCCCTTCATCATACCATCATCAGGGCTATCATCAGCTCTCACCAACCAGTTTCCTGGTCAACACTAAGCCCTCACCTAATGATGATAACAATTTCCCAAACAACAGAAGGCGAAGAAATACTTTTAACCAGGGGAGAAGAAGGTTGAATGGAAGATCACTGAAGGCTCAGAGAGAAGATAGTGTTAGAAGAACGGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCAGCAATTGTGGACAGGTAATCGATTGTCGAATTTGTGGTGACCCTCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAGCATGGTGCAAGGGCTGCTTTAAACCTCGGTGGTACCGTGCTTGGTTACTATCCAGTCAGGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCAACATTTCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTGCCAGGACTGTCTACTGTACAAATATCGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGCGGCGAGGTTACGCGCCTGAGGCTTTTAGGGGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCGGAAAGTGCAATTATCGCACTAAATTGTAGCGGGATGCTCTTGGGAACCCAGCCTATCAGGGTAAGTCCTTCGAAGACCCCTGTGAGGTCAAGGGTTGCGCGTCCAGTGTCGCATTAA 882 0.4524 MAAVAEISVDSNNKMESKGKPESEFSVQKLVDMFTKLNPLAKEFFPSSYHHQGYHQLSPTSFLVNTKPSPNDDNNFPNNRRRRNTFNQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFSNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRSRVARPVSH* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1170 293 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 292 - -
Aev10g1170 293 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Aev10g1170 293 MobiDBLite consensus disorder prediction 60 93 - -
Aev10g1170 293 SMART rrm1_1 109 179 IPR000504 GO:0003723
Aev10g1170 293 SMART rrm1_1 206 277 IPR000504 GO:0003723
Aev10g1170 293 CDD RRM2_CID8_like 201 282 IPR034825 -
Aev10g1170 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 183 IPR000504 GO:0003723
Aev10g1170 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 281 IPR000504 GO:0003723
Aev10g1170 293 MobiDBLite consensus disorder prediction 1 23 - -
Aev10g1170 293 Gene3D - 193 287 IPR012677 -
Aev10g1170 293 Gene3D - 64 184 IPR012677 -
Aev10g1170 293 CDD RRM1_CID8_like 106 185 IPR034823 -
Aev10g1170 293 SUPERFAMILY RNA-binding domain, RBD 196 286 IPR035979 GO:0003676
Aev10g1170 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Aev10g1170 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Aev10g1170 293 SUPERFAMILY RNA-binding domain, RBD 70 181 IPR035979 GO:0003676
Aev10g1170 293 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 292 - -
Aev10g1170 293 MobiDBLite consensus disorder prediction 60 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1170 Aev-Chr10 15449232 15453614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1170 105 262 Eukaryotic Initiation Factors Gene Family AT1G34140 26.708 2.22e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1170 - - gmx:100818291 491.115