Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0957 ATGCCCGCGCTCATCGCTTTCATATACCGCATTTCCCCCCTTCTCATTTCACTACTTCTCTCTGATTCCTTCCTTTCCCTTTTTTCTCACTCAATAAAAACCACAACGCCCCCAAAACCCCTTCTCTCATACATACTATCTCTAGGGCGCGCACACGCGCATTCACAACACGACACAGAAACACTTCTTATTTCCACCATTTCCCTTCCCTTCATCGGAAATTTGTCAATGAAGCGCGAGTTCTACGAAATCTCCGACGACGAATGGGACAACCATGACTTCAAGCCCTCTCGAGTCCTCAAGAGACCCCACTCTTCCCCTTCTCCGCCGCCCATCGAGTCCTTCGCCTTCAACAACAACAACCGCGGAATTTCCCGCCACTCTAACGATGATGTCAATGGCGATGATGACGATGATGATTGCGTCGAGATCACGCGGGATTCTGCGGGAATTCTGGATGACCTGGAGGACGATGACTTGGATGAAAACAATGCCGCCGCAGCCGCGCCGAATCGCGGCCGTCGGTTCATCATCGACGACGATGATGATGAAGACAGCGATAGGGGTAGGGATAATGGTAGAAATAGGAATAGGGATGTTGCGGAATTGTATGAAATAGGGTCTTCTTCTGAGGAGGAGGTGGAAGAAGAGGTTGATGAGAGCGATGTGGTTGGTAGGGCTTTGCAGAAGTGCGCGAGAATATCGGCGGAGTTGAAGGGGGAGCTATTTGGGTCGTCGGGGACAGCGTGCGAGAGGTATTCCGAGGTGGAATCTTCTTCAGTGAGGATCGTTACACAGGAGGATGTGGATGTTGCTTGTGGGTCTGAGGATTTGGATTTTCAGCCATTACTGAAGCCTTATCAGCTTGTTGGTGTTAACTTTTTGCTTCTCTTGTATAGGAAACAGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATTACATATTTAACTTTGTTGAACCACTTGCATAATGATCCTGGTCCACATCTAATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTAAAGAAATGGTGCCCTTCATTTTCTATTCTTCAATACCATGGGGCTCGACGAGCAGCATATTGCAAGGAGTTGAGCTCCTTGTCCAAGGCAGGATTGCCTCCCCCATTTAACGTCCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATTTTGAAGCGCTGGAGGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGCAAAATCTGATGAATGTTGCACGAAATGCAAACCAGCGGCTGATGTTGACGGGGACACCACTTCAGAATGATTTACATGAGTTGTGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACCTGAAAAAATTACTAAATCCCGAAGATAGAGATTTAATAGGCCGTATGAAGTCCATCTTGGGGCCATTTATTTTGCGACGCTTGAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATACAACAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCTCGGATAGCAAAATGTTCTGATCTTAATGCGAAGACTGTCCTTGGAGTTCTTCCTAAAAAACAGATAAATAATTACTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTGATACGGCGAATATACAATGATGAGGATGTAATTCGCTTTGCTAGGAAGTTGCATCCGATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATCGAGGAACTTAAAAGTTACAATGACTTTTCTATTCACCGGCTTTTACTTCACTATGGTGTCAACGATAGAAAGGGGATCCTTCCTGAAAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTGGCAGAGCTGCTTCCTTCACTAAAGAAGGACGGTCATCGGGTCTTGATATTCAGTCAATGGACATCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGTACACAGGTGGCAGAAAGGCAAAGTATAGTGGATGCATTCAACAACAATACTTCCATATTTGCATGCTTGCTTTCCACAAGAGCTGGAGGACAAGGTTTGAACTTAACAGGAGCTGATACTGTAGTAATTCATGACATGGATTTTAATCCACAGATCGATAGACAAGCAGAAGATCGCTGTCATCGGATTGGTCAAACTAAGCCCGTAACCATATATCGGCTGGTAACCAAGGGAACAGTTGATGAGAATGTTTATGAGATTGCTAAGAGAAAGTTAGTACTTGATGCCGCAGTCCTAGAGTCCATGGAGGTGGTTAGCGAAGGCGACATGCCTGAGAAGACCATGGGAGAGATATTGTCGGCGATTTTGTCAAGTTAA 2502 0.4484 MPALIAFIYRISPLLISLLLSDSFLSLFSHSIKTTTPPKPLLSYILSLGRAHAHSQHDTETLLISTISLPFIGNLSMKREFYEISDDEWDNHDFKPSRVLKRPHSSPSPPPIESFAFNNNNRGISRHSNDDVNGDDDDDDCVEITRDSAGILDDLEDDDLDENNAAAAAPNRGRRFIIDDDDDEDSDRGRDNGRNRNRDVAELYEIGSSSEEEVEEEVDESDVVGRALQKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACGSEDLDFQPLLKPYQLVGVNFLLLLYRKQIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSFSILQYHGARRAAYCKELSSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWQNLMNVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSDLNAKTVLGVLPKKQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILPEKHVMLSAKCRALAELLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQSIVDAFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEVVSEGDMPEKTMGEILSAILSS* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0957 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 475 IPR014001 -
Aev10g0957 833 Pfam SNF2-related domain 301 590 IPR000330 GO:0005524|GO:0140658
Aev10g0957 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 663 813 IPR001650 -
Aev10g0957 833 MobiDBLite consensus disorder prediction 174 201 - -
Aev10g0957 833 MobiDBLite consensus disorder prediction 98 142 - -
Aev10g0957 833 PANTHER SNF2/RAD54 HELICASE FAMILY 142 831 - -
Aev10g0957 833 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 142 831 - -
Aev10g0957 833 CDD SF2_C_SNF 650 783 - -
Aev10g0957 833 MobiDBLite consensus disorder prediction 111 127 - -
Aev10g0957 833 Pfam Helicase conserved C-terminal domain 660 772 IPR001650 -
Aev10g0957 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 814 IPR027417 -
Aev10g0957 833 SMART helicmild6 689 772 IPR001650 -
Aev10g0957 833 Gene3D - 521 831 IPR027417 -
Aev10g0957 833 Gene3D - 254 494 IPR038718 -
Aev10g0957 833 MobiDBLite consensus disorder prediction 164 201 - -
Aev10g0957 833 CDD DEXHc_Snf 284 477 - -
Aev10g0957 833 SMART ultradead3 280 485 IPR014001 -
Aev10g0957 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 510 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0957 Aev-Chr10 12599278 12609415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0957 305 814 RAD5 or RAD16-like Gene Family AT5G22750 27.027 7.14e-48 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev10g0957 SNF2_N 2.8e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0957 K14439 - gmx:100806323 1207.97