Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev10g0889 | ATGGATGGTAGGAGAAGGTCAAGGGTCGGAGACTTTTCGACCAGCGGTGAGAGACGGGGGAGATCTGTGGTCAGGTCCTTTACTTCTACTAGCTTGGGACGAGGGAGAAACACTGTGCCTAGAGGGAGAATAAGGAGGGGTGTGAGTAGAGGGTTCACAAAAAATGAGAGAAATGTGAGGAACGAGCGTGGGCAGAATTGGTCTCATAACCAATCACTTGGAAATAATAGAAGGTGGTTCTCAGTCTTTATCAATAACATTCCTTGGTCTCTAGGAAAGGGATGGATGTGGAGGTTATTTAAACGGTTTGGATGGATTATAGATATTTACATATCCAAACGTAAAAGATATGGTAAAAATGTGACGTTCGGGTTCGTGAGATATAAATCCTGGGAGGAGGCTATGAGGGCGGTTAGAGGTACTGATGGATTAGTCGTTGAGGGGCGGAGACTGATGGCAAACCTATCGCAGGACAAACGCCATGCCCGGGAGAGCAAAATGTTATGGAGAAAGATTCCAGATAATGGGGCGAAGAGTAGGCAAAAGGATGAGTGTCTACACTCTGAAGCTAATGAGCGCAGAGAACATTTGGGGAAGGCTAGGGTTGATTGTTGTGTTGGAAACCCTATGGAACCAGTTGAAATAAGTGATAGAATCACAGGTGTCACAAGCATGAAAGCAATTGACGCTACCTGGATCCTTATTGAGTTCGACAGTGAGCTAAATAGGGATGAAGGGATCAAGCGTATAGAACTTGAACTTAGAAGTCTGATCGAGGAGGTAAGGAAATTGGAGGAAGGCTTTTCAGTTCAGGACAGAGAAGCTTGGATAAGGTGCATTGGTATCCCTATCCATGGATGGGCTGATCATAACTTCAAAAAGATTGCTGACCTTTGGGGCGAATTTGTGGAGTTCAGAGTTGAGGATGAATTCAGAGCTGTTAAGATTAAAGTCGTGACCCCTATTCAGGAGAAGCTTCAAGGCTGGATCTCCCTAATCCTTGGTAGTTCTAAATACCGAGTATGGGTGAGTGAAATGGAGACTCTAAAAGATGAGTTGAGAATTGAGGAGAGTAGCAACCATGCATTGAACCCCCTGATGATTAGCCCACGAGGAGAAGCTGCTGGCGAAACGGACTTGTGTGAGGTGGCTAATGCAGCTGGTGTAGTGGCAGACTTGAGTACCAGTACTCCAGAGGAAGTTGAAAAGTCACAGGAGGAGCAGCCATCATCGATGGAAGTGGAAGAGGTTCCTGAGACCCCATGGTCTGCGAGAGAGGTGGGTCGTAAGGACAATGCAGGCCCAAGGCTGCATGATAGGCCGGTGTTGGGGGTGGGATCGATGGGCGCTCATGAGTTTGGAAGCAATAATGATGATGGGTCGGCGGGTTCGGCTACTAGCAGGACCCAATGCCTGGAGACTAGCACAAGAACTGACGAAGTTATTGGGAATTTAAAGCAGAACGTTGAGTTTCAAATCCCAATACTACAGAGAGAAACCGCAGATGAGTGTTTTGAACCGGTGGAAACTGATATGGACCCACCTTTCTCGCCTGGGTTTGGGCCTCTAAGTCTTGAGGTGGCCCAATTATGCAATATTCCCTTTAATGAGCCCAAGAACTTTGACGATGAGAATAATGTAAGTACTGAGAGTGAATATGAAGGTCGGGCGAAAACCAATGAAGTGAGTGACAACTGCGAGGAAGAGGAAGCTATTAGGGCTGAGGCCAGGGCGGCTCTTGAAGCAGGGAGGATAACTGGGTATCCGATTGAAGACGACATTCAATTGCTGACCGCCCTCTCCAAAATCAAAAGAAGGCAGAGACAGCGGGCTAAGGCTCTCAAGAAGGCGGAAAATACGTACTGCCCTACTGGGGGTAAGTTCGACAAACTTCGCAGACAACGCTAA | 1908 | 0.4727 | MDGRRRSRVGDFSTSGERRGRSVVRSFTSTSLGRGRNTVPRGRIRRGVSRGFTKNERNVRNERGQNWSHNQSLGNNRRWFSVFINNIPWSLGKGWMWRLFKRFGWIIDIYISKRKRYGKNVTFGFVRYKSWEEAMRAVRGTDGLVVEGRRLMANLSQDKRHARESKMLWRKIPDNGAKSRQKDECLHSEANERREHLGKARVDCCVGNPMEPVEISDRITGVTSMKAIDATWILIEFDSELNRDEGIKRIELELRSLIEEVRKLEEGFSVQDREAWIRCIGIPIHGWADHNFKKIADLWGEFVEFRVEDEFRAVKIKVVTPIQEKLQGWISLILGSSKYRVWVSEMETLKDELRIEESSNHALNPLMISPRGEAAGETDLCEVANAAGVVADLSTSTPEEVEKSQEEQPSSMEVEEVPETPWSAREVGRKDNAGPRLHDRPVLGVGSMGAHEFGSNNDDGSAGSATSRTQCLETSTRTDEVIGNLKQNVEFQIPILQRETADECFEPVETDMDPPFSPGFGPLSLEVAQLCNIPFNEPKNFDDENNVSTESEYEGRAKTNEVSDNCEEEEAIRAEARAALEAGRITGYPIEDDIQLLTALSKIKRRQRQRAKALKKAENTYCPTGGKFDKLRRQR* | 636 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Aev10g0889 | 635 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 166 | IPR035979 | GO:0003676 | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 539 | 558 | - | - | |
Aev10g0889 | 635 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 80 | 158 | IPR000504 | GO:0003723 | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Aev10g0889 | 635 | Coils | Coil | 247 | 267 | - | - | |
Aev10g0889 | 635 | Gene3D | - | 75 | 185 | IPR012677 | - | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 543 | 558 | - | - | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 419 | 437 | - | - | |
Aev10g0889 | 635 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 82 | 151 | IPR000504 | GO:0003723 | |
Aev10g0889 | 635 | Pfam | Domain of unknown function (DUF4283) | 223 | 309 | IPR025558 | - | |
Aev10g0889 | 635 | CDD | RRM_SF | 82 | 151 | - | - | |
Aev10g0889 | 635 | SMART | rrm1_1 | 81 | 154 | IPR000504 | GO:0003723 | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Aev10g0889 | 635 | MobiDBLite | consensus disorder prediction | 393 | 442 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev10g0889 | Aev-Chr10 | 11476283 | 11478289 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev10g0889 | 48 | 159 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 25.893 | 3.91e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev10g0889 | - | K12900 | pvu:PHAVU_008G195200g | 73.1738 |