Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0889 ATGGATGGTAGGAGAAGGTCAAGGGTCGGAGACTTTTCGACCAGCGGTGAGAGACGGGGGAGATCTGTGGTCAGGTCCTTTACTTCTACTAGCTTGGGACGAGGGAGAAACACTGTGCCTAGAGGGAGAATAAGGAGGGGTGTGAGTAGAGGGTTCACAAAAAATGAGAGAAATGTGAGGAACGAGCGTGGGCAGAATTGGTCTCATAACCAATCACTTGGAAATAATAGAAGGTGGTTCTCAGTCTTTATCAATAACATTCCTTGGTCTCTAGGAAAGGGATGGATGTGGAGGTTATTTAAACGGTTTGGATGGATTATAGATATTTACATATCCAAACGTAAAAGATATGGTAAAAATGTGACGTTCGGGTTCGTGAGATATAAATCCTGGGAGGAGGCTATGAGGGCGGTTAGAGGTACTGATGGATTAGTCGTTGAGGGGCGGAGACTGATGGCAAACCTATCGCAGGACAAACGCCATGCCCGGGAGAGCAAAATGTTATGGAGAAAGATTCCAGATAATGGGGCGAAGAGTAGGCAAAAGGATGAGTGTCTACACTCTGAAGCTAATGAGCGCAGAGAACATTTGGGGAAGGCTAGGGTTGATTGTTGTGTTGGAAACCCTATGGAACCAGTTGAAATAAGTGATAGAATCACAGGTGTCACAAGCATGAAAGCAATTGACGCTACCTGGATCCTTATTGAGTTCGACAGTGAGCTAAATAGGGATGAAGGGATCAAGCGTATAGAACTTGAACTTAGAAGTCTGATCGAGGAGGTAAGGAAATTGGAGGAAGGCTTTTCAGTTCAGGACAGAGAAGCTTGGATAAGGTGCATTGGTATCCCTATCCATGGATGGGCTGATCATAACTTCAAAAAGATTGCTGACCTTTGGGGCGAATTTGTGGAGTTCAGAGTTGAGGATGAATTCAGAGCTGTTAAGATTAAAGTCGTGACCCCTATTCAGGAGAAGCTTCAAGGCTGGATCTCCCTAATCCTTGGTAGTTCTAAATACCGAGTATGGGTGAGTGAAATGGAGACTCTAAAAGATGAGTTGAGAATTGAGGAGAGTAGCAACCATGCATTGAACCCCCTGATGATTAGCCCACGAGGAGAAGCTGCTGGCGAAACGGACTTGTGTGAGGTGGCTAATGCAGCTGGTGTAGTGGCAGACTTGAGTACCAGTACTCCAGAGGAAGTTGAAAAGTCACAGGAGGAGCAGCCATCATCGATGGAAGTGGAAGAGGTTCCTGAGACCCCATGGTCTGCGAGAGAGGTGGGTCGTAAGGACAATGCAGGCCCAAGGCTGCATGATAGGCCGGTGTTGGGGGTGGGATCGATGGGCGCTCATGAGTTTGGAAGCAATAATGATGATGGGTCGGCGGGTTCGGCTACTAGCAGGACCCAATGCCTGGAGACTAGCACAAGAACTGACGAAGTTATTGGGAATTTAAAGCAGAACGTTGAGTTTCAAATCCCAATACTACAGAGAGAAACCGCAGATGAGTGTTTTGAACCGGTGGAAACTGATATGGACCCACCTTTCTCGCCTGGGTTTGGGCCTCTAAGTCTTGAGGTGGCCCAATTATGCAATATTCCCTTTAATGAGCCCAAGAACTTTGACGATGAGAATAATGTAAGTACTGAGAGTGAATATGAAGGTCGGGCGAAAACCAATGAAGTGAGTGACAACTGCGAGGAAGAGGAAGCTATTAGGGCTGAGGCCAGGGCGGCTCTTGAAGCAGGGAGGATAACTGGGTATCCGATTGAAGACGACATTCAATTGCTGACCGCCCTCTCCAAAATCAAAAGAAGGCAGAGACAGCGGGCTAAGGCTCTCAAGAAGGCGGAAAATACGTACTGCCCTACTGGGGGTAAGTTCGACAAACTTCGCAGACAACGCTAA 1908 0.4727 MDGRRRSRVGDFSTSGERRGRSVVRSFTSTSLGRGRNTVPRGRIRRGVSRGFTKNERNVRNERGQNWSHNQSLGNNRRWFSVFINNIPWSLGKGWMWRLFKRFGWIIDIYISKRKRYGKNVTFGFVRYKSWEEAMRAVRGTDGLVVEGRRLMANLSQDKRHARESKMLWRKIPDNGAKSRQKDECLHSEANERREHLGKARVDCCVGNPMEPVEISDRITGVTSMKAIDATWILIEFDSELNRDEGIKRIELELRSLIEEVRKLEEGFSVQDREAWIRCIGIPIHGWADHNFKKIADLWGEFVEFRVEDEFRAVKIKVVTPIQEKLQGWISLILGSSKYRVWVSEMETLKDELRIEESSNHALNPLMISPRGEAAGETDLCEVANAAGVVADLSTSTPEEVEKSQEEQPSSMEVEEVPETPWSAREVGRKDNAGPRLHDRPVLGVGSMGAHEFGSNNDDGSAGSATSRTQCLETSTRTDEVIGNLKQNVEFQIPILQRETADECFEPVETDMDPPFSPGFGPLSLEVAQLCNIPFNEPKNFDDENNVSTESEYEGRAKTNEVSDNCEEEEAIRAEARAALEAGRITGYPIEDDIQLLTALSKIKRRQRQRAKALKKAENTYCPTGGKFDKLRRQR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0889 635 MobiDBLite consensus disorder prediction 1 40 - -
Aev10g0889 635 SUPERFAMILY RNA-binding domain, RBD 60 166 IPR035979 GO:0003676
Aev10g0889 635 MobiDBLite consensus disorder prediction 539 558 - -
Aev10g0889 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Aev10g0889 635 MobiDBLite consensus disorder prediction 1 15 - -
Aev10g0889 635 Coils Coil 247 267 - -
Aev10g0889 635 Gene3D - 75 185 IPR012677 -
Aev10g0889 635 MobiDBLite consensus disorder prediction 543 558 - -
Aev10g0889 635 MobiDBLite consensus disorder prediction 419 437 - -
Aev10g0889 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Aev10g0889 635 Pfam Domain of unknown function (DUF4283) 223 309 IPR025558 -
Aev10g0889 635 CDD RRM_SF 82 151 - -
Aev10g0889 635 SMART rrm1_1 81 154 IPR000504 GO:0003723
Aev10g0889 635 MobiDBLite consensus disorder prediction 19 36 - -
Aev10g0889 635 MobiDBLite consensus disorder prediction 393 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0889 Aev-Chr10 11476283 11478289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0889 48 159 Eukaryotic Initiation Factors Gene Family AT3G16380 25.893 3.91e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0889 - K12900 pvu:PHAVU_008G195200g 73.1738