Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0560 ATGCTTCTCCCTTCCATGATGCTCGCCAGGGTTGTTCCCATCATGATATCACTGAATTCTCTGTTGCAAAGCTTCGTCTGCTACAAGTTATTTTGGGAAGAGTCTGTGCTGAAGAAGAGGAAGAGAGAGGAGGAGTGGGCTTTGGCCAAGAAGCAAGAGCTTGATGCTGCCAAGAAGAAGAGAGCTGAGAGCCGTAAGCTCATCTACAACAGGGCTAAGCAGTATTCCAACGAGTACCAGGAGCAGGAAAGGGAACTGATCCAGTTGAAGCGTAAGGCAAAGCTGAAGGGTGGATCTTATGTTGATCCTGAGGCTAAGCTCTTGTTTATTATCCGCATTCGTGGTATTAATGTCATGCACCCCAAGACAAGGAAAATCTTGCAGCTGTTGCGGTTGAGACAGATCTTCAACGGTGTGTTCCTTAAGGTTAACAAGGCTACAATGAACATGCTTCACAGAGTTGAGCCCTATGTGACTTATGGATACCCTAATCTTAAGAGTGTCAAAGAACTCATCTACAAGAGGGGTTATGGTAAGCTGGACAAGCAGAGAATTGCCCTCACTGACAACTCCATTATTGAGCAGTTTGGAATCATCTCCATTGAAGATCTTATCCATGAGATCATTACTGTTGGACCCCATTTTAAGGAAGCAAACAACTTCCTTTGGCCTTTTAAGCTGAAGGTTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATATCGAAGGAGGGGATGCTGGAAACATGGAGAACTACATCAATGAGCTAATCAGGAGAATGAATTAG 789 0.4461 MLLPSMMLARVVPIMISLNSLLQSFVCYKLFWEESVLKKRKREEEWALAKKQELDAAKKKRAESRKLIYNRAKQYSNEYQEQERELIQLKRKAKLKGGSYVDPEAKLLFIIRIRGINVMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLDKQRIALTDNSIIEQFGIISIEDLIHEIITVGPHFKEANNFLWPFKLKVPLGGLKKKRNHYIEGGDAGNMENYINELIRRMN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0560 262 TIGRFAM uL30_euk: 60S ribosomal protein uL30 34 262 IPR005998 GO:0000463|GO:0003735|GO:0022625
Aev10g0560 262 CDD Ribosomal_L7_archeal_euk 107 262 IPR035808 -
Aev10g0560 262 ProSitePatterns Ribosomal protein L30 signature. 126 158 IPR018038 -
Aev10g0560 262 Gene3D - 107 262 IPR036919 -
Aev10g0560 262 SUPERFAMILY Ribosomal protein L30p/L7e 107 262 IPR036919 -
Aev10g0560 262 Pfam Ribosomal L30 N-terminal domain 34 103 IPR012988 -
Aev10g0560 262 Coils Coil 65 92 - -
Aev10g0560 262 Pfam Ribosomal protein L30p/L7e 108 158 IPR016082 -
Aev10g0560 262 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 33 262 - -
Aev10g0560 262 PANTHER 60S RIBOSOMAL PROTEIN L7 33 262 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0560 Aev-Chr10 6116102 6127021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0560 34 262 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.549 7.63e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0560 K02937 - gmx:100305682 394.43