Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0392 ATGTCAGTGCTGATCGTGACAAGCTTAGGTGACCTGGTTGTCGATTTGCACACCGACAAGTGCCCCTTGACCTCCAAGAACTTCCTTAAGCTCTGCAAGATTAAGTACTACAATGGGTGTCTGTTTCACACTGTTCAGAAGGATTTCACTGCTCAGACTGGTGACCCTACTGGAACCGGCACTGGTGGCGATTCAGTCTACAAGTTTCTTTATGGCGACCAAGCTCGGTTTTTTGGCGATGAGATTCGTGTTGATTTGAAGCATTCAAAGATTGGAACAGTTGCCATGGCGAGTGCGGGAGAGAATCTGAATGCTTCGCAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTCGATGGGAAGCACACGGTTTTTGGTGAGGTAGCGGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTACGTTGATGAGAAGAGTAGACCATATAAAAATATCCGAATTAAGCACACATACATCCTAGAGGACCCTTATGATGACCCTCCTCAGCTAGCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCTAAAGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTGCCTATGGATGAACAATTGAACGCAGCAGAGCTTGAGGAGGTTATTAGAGAAAAAGAAGCACGTTCTAGGGCAGTCGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTGCTATTTGTCTGTAAATTGAACCCGGTTACTGAGGATGAAGACTTGCATACAATATTTTCACGCTTTGGAACTGTAACATCTGCTGAAATCATCCGTGATCAGAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACTGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGAATACATGTGGATTTTAGTCAAAGTGTTTCAAAACTGTGGTCGCAATACAGGCGGAAAGATCAGAAGGGAAAAGGTGGTGGCTGCTTCAAATGTGGTTCTACAGATCATATTGCCAAGGATTGCACCGGAGATGCTACAACAAAACAACCTGCTAAATTCGTCTTGAAGGATAACAACGCCCAACGCGGTGGAGATAACACTAGGTATGAAATGGTTTTTGATGGAGATAACTCGGGAAGTCCACGGCGAGATACAAAAACCCAGCGGCATGACAAGGATGACCTAGTTGAGAAAAAACGGAGAAAGGAAAACTCCGAGGATCATATTCATAGAGGTCGTAGGGACGACGAGATGGTAGGCTCAAACAACAGGAGTAGGTACAGTGATAGAAGCAGAGCACATGGGGGATCTGATAGGGATACAAGAGATTCAGATTCTCATGCTGAAAGGAAAGACAGAGATATGCATAAGGAGAAACATAGAGATGACGACTATCGGCGGAAAGATGATAGGTACACCGATAGAGATGACGACTATCGGCGGAAAGACGATAGATGCACAGATAGACAGGCTAGTGGAGATTATAGGAAGAGACCTGAAGACAGTGGACGGCAGAATGCGAAGTCCGATGATGCCGGAAGAAGAAAACGAAGCCCTGGTGAAGATTACAAACATAGAAGAGGGGATGAAGATTACAAACACAAAAGGGAGCATGAAGATTACAGACACAGAAGGGACGAACGTGGACATAGAAGACAACAAGATGCTGAATCTCATGACCATTCTCATAGGAGACATCATGGTGACAGGAGATGA 1755 0.441 MSVLIVTSLGDLVVDLHTDKCPLTSKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFGDEIRVDLKHSKIGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKSRPYKNIRIKHTYILEDPYDDPPQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLNAAELEEVIREKEARSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVTSAEIIRDQKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATTKQPAKFVLKDNNAQRGGDNTRYEMVFDGDNSGSPRRDTKTQRHDKDDLVEKKRRKENSEDHIHRGRRDDEMVGSNNRSRYSDRSRAHGGSDRDTRDSDSHAERKDRDMHKEKHRDDDYRRKDDRYTDRDDDYRRKDDRCTDRQASGDYRKRPEDSGRQNAKSDDAGRRKRSPGEDYKHRRGDEDYKHKREHEDYRHRRDERGHRRQQDAESHDHSHRRHHGDRR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0392 584 MobiDBLite consensus disorder prediction 390 576 - -
Aev10g0392 584 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Aev10g0392 584 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Aev10g0392 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Aev10g0392 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Aev10g0392 584 Gene3D - 1 172 IPR029000 -
Aev10g0392 584 CDD cyclophilin_RRM 4 169 IPR035538 -
Aev10g0392 584 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Aev10g0392 584 SUPERFAMILY RNA-binding domain, RBD 230 339 IPR035979 GO:0003676
Aev10g0392 584 SMART rrm1_1 244 317 IPR000504 GO:0003723
Aev10g0392 584 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Aev10g0392 584 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Aev10g0392 584 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Aev10g0392 584 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Aev10g0392 584 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Aev10g0392 584 MobiDBLite consensus disorder prediction 370 584 - -
Aev10g0392 584 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Aev10g0392 584 Gene3D - 179 327 IPR012677 -
Aev10g0392 584 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 497 IPR035542 -
Aev10g0392 584 CDD RRM_PPIL4 240 322 - -
Aev10g0392 584 Gene3D - 333 418 - -
Aev10g0392 584 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0392 Aev-Chr10 4168789 4177614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0392 7 166 U-box Gene Family AT5G67530 41.250 2.61e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0392 K12735 - gmx:100794150 819.69