Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0244 ATGTCCGAGGACGATTCATTCCCCGACCACAAGCTCTGCGGTTTCCTGTGTGCGGTTCTCAAATTCCCTCCCCCGCCGCAACCAAACCCCATCGACCGATGCGAGATCTTCAGCGAAGGGTTCCGGTCCCAAAACGGCGTCGTTCTGTCTCCTGTGTGTTCAGCCTCCAATTCGGAGCAATGCCAGGAGAGCGAGGGCACGAGGGTAAGGAGGACGAGAAGGGTTGGGTCTGTGAATGGGAGCATTAGCGTGGTTCACCAGCTTCACGCGCTTGTGAGCCGAAGCTTCTTGAAGTATGATGCTCGTGTGGTGTGTGTGGATGTGGGAGAAGGGTGTGCTGAGGCCAGGGCTGTCGTCCTGATTGATGTTTACGTTCCAATTGAGCTCTGGAGTGGCTGGCAGTTTCCGAAATCCGGCGCAATCGCCGGCGCCCTCTTTCACCACTTAAGGTGTGATTGGGACGAGAGAAGTTCAATGCTTTCTTATCCAGACTACTTTAGGAAAAGTGGTGGAGCAAGTGAGAGCATCTGGAACCTTTCTGACTGTCATGTACTTGGATGCAAGCTCCACCACTGTGGAAGTGATTCTTCAAAGAAAAGGCTATTTGAACTTCATGAAATATTTAAGATGGTTCCTGGTTTAGGAAAACAGCAGAAGTCTATTAGTTCCAGGATAATACCTATGCATAACACCTTGAGATCTGGGATTTGGGAGATACCTGATGATGTGTTAACAAAAATTTTATCTTCCCTGGGCCCAGTGGACCTCACTAGGGTATCTGCAACTTGTTGCCATCTAAGATCCTTGGCTGCTTCAGTTATGCCTTGTACAAAGCTAAATCTCTTTCCTCATCAGAAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCACTTGCCCCATCCTTTATATGTTGGTCTCTTCACAGAAGATGGTTTCAGTTTCCACATAAATACTGTATCTGGTGAAATAGTTTCTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTCTGTGATGAGCCTGGACTGGGTAAGACTGTAACAGCTCTTACTCTTATTGTGAAGACACAAGGTACTTTAGCAGACCCACCAGATGTGGCGCAAGTAGTCTGGTGTCAACATAATGGTAACAAAAAATGTGGCTATTATGAGATCAGTGTTAACAACATAACTGGTTTTAGTATGTTAAGTAAGAGGGATATGTGCCAAAATGCTAGTAAGAATAATGAGAATCATGATTACTCATCAAAAAGAGCCCGGTTGATTGGTCCTGATGAGCAAATTACTCCATATTCTGCGGGAGCTATGAAATCACCGGTAGCTGCATGCTCTGAGGAATTTATGCCAGAAAGTCGATGCACTAGGAGCTTGAGTCACACACAGAAAAATTTAAATTTTACATTTGAAGAGGAAGATTTGACTTTCAAGGAAAGAAAATTTGGTGAAAGATCAGTTAAAACAAAGCATGCATCAGATACTGCATCATTCCAATCTCAAAACAAGATAGTTGATACTTCATATGGATGTGGAAGAAGTTATAAATGGCATGGGAAGCCTAAAGTTGACCGTATTGAGTACAATGATACCTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAGCTTACAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACAGTGACCCTTTATATCAGAGTTGTGGTGTCCCAGAGCAATACTTTCAGAATAGCTGTAAGATAACTAACTTGCCAGGTTTTCACTTGAAAGGAACTCCTGGGGGCCAGGAACAAAATGTTTCATTTTTTATTAGTGTGCTCAAGGAGCACTGTACTTTGATAAATTCTCAGACAAAGAAGGCCCTGAATTGGTTGGCTAAAATTTCAACAGATAAGCTTGCAGGGATGGAAACAAATGGTATACGAGGTCCTATTTTAAACACCACTGTGGCTAATGGATATTTTAATGCATTCCACAAAATATTTCTAGCATTTGGCCTTGTAAAGAGAGTAGAAAAAGGTGTTTGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCAGCCCTTGGCATGGCTCTCCACGAGCCATTAGACTTTGTGAGGCTGTACTTGTCAAGAGCAACCCTAGTAGTTGTTCCGGCAAATTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTAAGACCTGGTCAATTACGGGTGTATGTTTGGGATGATCATCAAAAGCTATCTGCACACTGTCTAGCTTGGGATTACGATGTTGTCATAACTACCTTTAGTCGTCTGAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATTATTTTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAATATAACAAACAAGTTGCAGATGGCTATTTCATTCACAGCTTCAAATCGTTGGATACTTACAGGTACTCCAACCCCTAACACTCCTAACAGCCAACTCCCACATCTACAACCTGTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCTAAAGTCATGGGAAGCTGCCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTACTGCATTTACTTTGCAAATGCATGATAAGCGCAAGAAAGATTGATTTGCAAAGCATTCCGCCATGCATCAAGAAAGTTGTTTTTCTAGATTTCAATGAGGAGCATGCTAGAAGCTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTCAATCCAAAACAGTGGAAATTTCGAAGTGCAACTATAAAAAACGTCAGGCTCTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGGCATGTTAACACAAAGTGGTCTTGATCCTACTTCAGCAGAGTATAGCTCTATTAGATATAGTCTCCTGTTTGGTGGTCATTGTGTGAGATGCAAGGAGTGGTGCCGTCTTCCTCTCATTACACCATGTCGGCATCTGTTGTGCCTCGATTGTGTTTCTCTGGACAATATGAAGTGTACATATCCTGGATGTGGTAAATTGTATGAGATGCAGAGCCCTGATACACTAGCCCGACCAGAAAATCCAAACCCAAAGTGGCCTGTACCCAAGGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGCAGTAAAGTCTCCTATCTTGTTCAGAGATTGAAAGCTTTGCTAAAAAGCAAAGAAGAGATGAGTTTCTACAAAGGCAATAGCAATGAAGAGATGGGTACAGAGACTAGTTTCCCTTTGAAAATGACAGATGGCAGATCATTTCTGAAATGTTCTGTTAGAAGCCCTAATGCCAATATGAATCCTGACAAAGTTCTGATATTTTCCCAATTTCTTGAGCATATACATGTCATTGAACAACAGTTGACTATTGCCGGTATCAAATTTGCTGGAATGTATAGCCCAATGCATTCAACCAGTAAGAAGAAGTCATTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTCGTTACACATGTGTTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGCAACAAGTTATTAGTCGTGCTCATCGCATGGGTGCTACTTGTCCTATTCATGTGGAAACTTTGGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAGTTGTTACAGGATGCTGATAAATGTAGACGATTTTCTAGTCAAGATTCTCCCAAATCTAAAGATGACGGTGGGGGACGAGGATATCGATCATTTCATGATTTTGCTGAGAGCAACTATCTACTGAAACTTAAATTTGTGCATGATCTTGCATGA 3975 0.4252 MSEDDSFPDHKLCGFLCAVLKFPPPPQPNPIDRCEIFSEGFRSQNGVVLSPVCSASNSEQCQESEGTRVRRTRRVGSVNGSISVVHQLHALVSRSFLKYDARVVCVDVGEGCAEARAVVLIDVYVPIELWSGWQFPKSGAIAGALFHHLRCDWDERSSMLSYPDYFRKSGGASESIWNLSDCHVLGCKLHHCGSDSSKKRLFELHEIFKMVPGLGKQQKSISSRIIPMHNTLRSGIWEIPDDVLTKILSSLGPVDLTRVSATCCHLRSLAASVMPCTKLNLFPHQKTAVEWMLHRERNAEHLPHPLYVGLFTEDGFSFHINTVSGEIVSGEAPTIKDFRGGMFCDEPGLGKTVTALTLIVKTQGTLADPPDVAQVVWCQHNGNKKCGYYEISVNNITGFSMLSKRDMCQNASKNNENHDYSSKRARLIGPDEQITPYSAGAMKSPVAACSEEFMPESRCTRSLSHTQKNLNFTFEEEDLTFKERKFGERSVKTKHASDTASFQSQNKIVDTSYGCGRSYKWHGKPKVDRIEYNDTWIQCDACHKWRKLTDNSMANSSAAWFCSMNSDPLYQSCGVPEQYFQNSCKITNLPGFHLKGTPGGQEQNVSFFISVLKEHCTLINSQTKKALNWLAKISTDKLAGMETNGIRGPILNTTVANGYFNAFHKIFLAFGLVKRVEKGVCRWYYPQNLNNLTFDVAALGMALHEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWDDHQKLSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNITNKLQMAISFTASNRWILTGTPTPNTPNSQLPHLQPVLRFLHEEAYGLNLKSWEAAILRPFEAEMEEGRSRLLHLLCKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMGMLTQSGLDPTSAEYSSIRYSLLFGGHCVRCKEWCRLPLITPCRHLLCLDCVSLDNMKCTYPGCGKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALLKSKEEMSFYKGNSNEEMGTETSFPLKMTDGRSFLKCSVRSPNANMNPDKVLIFSQFLEHIHVIEQQLTIAGIKFAGMYSPMHSTSKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEQQVISRAHRMGATCPIHVETLAMRGTIEEQMLELLQDADKCRRFSSQDSPKSKDDGGGRGYRSFHDFAESNYLLKLKFVHDLA* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0244 1324 Gene3D - 529 583 - -
Aev10g0244 1324 CDD DEXDc_SHPRH-like 711 888 - -
Aev10g0244 1324 Pfam F-box domain 238 273 IPR001810 GO:0005515
Aev10g0244 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 872 IPR027417 -
Aev10g0244 1324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 692 847 IPR014001 -
Aev10g0244 1324 Gene3D - 1054 1301 IPR027417 -
Aev10g0244 1324 SUPERFAMILY F-box domain 234 272 IPR036047 GO:0005515
Aev10g0244 1324 Pfam SNF2-related domain 284 945 IPR000330 GO:0005524|GO:0140658
Aev10g0244 1324 Pfam Helicase conserved C-terminal domain 1153 1252 IPR001650 -
Aev10g0244 1324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1146 1298 IPR001650 -
Aev10g0244 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 362 IPR027417 -
Aev10g0244 1324 ProSiteProfiles F-box domain profile. 233 285 IPR001810 GO:0005515
Aev10g0244 1324 ProSiteProfiles Zinc finger CW-type profile. 530 581 IPR011124 GO:0008270
Aev10g0244 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1281 IPR027417 -
Aev10g0244 1324 ProSitePatterns Zinc finger RING-type signature. 1025 1034 IPR017907 -
Aev10g0244 1324 Gene3D - 696 891 IPR038718 -
Aev10g0244 1324 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 1311 - -
Aev10g0244 1324 SMART helicmild6 1170 1252 IPR001650 -
Aev10g0244 1324 Pfam CW-type Zinc Finger 535 578 IPR011124 GO:0008270
Aev10g0244 1324 PANTHER OS01G0952200 PROTEIN 46 1311 - -
Aev10g0244 1324 CDD SF2_C_SNF 1155 1262 - -
Aev10g0244 1324 SMART ultradead3 277 860 IPR014001 -
Aev10g0244 1324 SMART fbox_2 239 279 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0244 Aev-Chr10 2788801 2798418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0244 717 1272 RAD5 or RAD16-like Gene Family AT5G22750 24.535 1.41e-38 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev10g0244 SNF2_N 1.8e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0244 - - adu:107471940 2170.59