Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0201 ATGGTGCTTCATCTCGTTGACCCCACTTCCCTGGCATGGTCTTCTTCCGTCTCATCCACAGCACCCATAACCTGTTCGACGAAATTCCCGAACGAGAACCAAACCAATTTTACAGCTCCAAAGCTGCCACTTCCTGTTGTTCGCGTTGTCGAATCCATGAAGCGGAGCTCGAAACCTGCGTCTTCGGGGCTCCAGAAGGACACAAAGAAGGACCTCTCGCGCATTCTGAGAATGGAAGCTGCCATAAAAGGCGTCGAGAACAAAGGGAATTCGTTGAAGCACAAGCAGCTTTGGCCCAAGGCTGTTCTCGAAGCCTTGGAAGAGGCCATCAAAGGGTACCGATGGCAAGCTGCCCTTAAGATATTTGCAATTCTTCGCAAGCAACATTGGTATGAACCTAGATGCCAAACATATGCAAGGCTACTGATGATGCTTGGCAAGTGCAAGAAGCCTGAAGAGGCTAGTCAGATCTTTGAGATCATGTTGTCTGAAGGGCTTAAGCCAACTGTTGATGTTTACACTGCTCTTGTAAGTGCTTATGGACAAAGTGGCCTCCTTCGTCAGGCATTTTCTACTGTTGAAGATATGAAATCAGTAGTTGACTGTGAACCAAATACATATACATATTCTATTCTTATCAGTTGCTGCACAAAATTTCAGTGTTTTGATTTAATTGATCGTATTCTTGTGGAGATGTCATATCTGGGGATTGAATGCAACAATGTGACGTATAATACGATAATTGATGGATATGGTAAGGCTGGAATGTATGAACACATGGAGAATTCATTGACAGATATGGTTGAAAGTGGCAACTGCCAACCAGATGTATTCACACTGAATTCTATTGTAGGAGCATATGGAAATGGTGGGCAAATTGACAGGATGGAAAAGTGGTACAATGAATTTCAGCTGATGGGCATAAAACCAGATATAAAGACATTCAATATGATGATAAAGTCCTACGGGAAAGCAGGCATGTATGAGAAGATGAAGTCTGTTATGGATTTCATGGAAAGAAGATTTTTCTCTCCGACAATTGTAACATATAATACAGTCATTGAGGTATTTGGCAAAGCTGGAGAAATTGAAAAGATGGATACACATTTTAAGAAAATGAAGCATCTAGGAGTAAAGCCTAACTCAGTAACTTATTGCTCTCTTGTCAATGCATATAACAAAGCTGGGCGTATTGACAAAGTTGACTCAATCATGAGGCATATAGTAAATTCTGATGTAATATTGGATACTCCCTTCTTTAATTGCATAATTAGCACCTATGGCCAGGCTGGTGACTTAAACAAAATGGGTGAGTTATTCTTGGAAATGAAAGACAGACAGTGTGAACCTGATAGCATCACTTTCGCATGCTTGATCCAGGCTTACAATTCCCATGGCATGACTGAGGCTGCTAGAAAGTTAGAAAACATGATGATTACTGCCAAAGATAGCTTCGAGTCAAAAGAAGGGTTAGAGCTCCTCCAGAGCTCCACTTCTCCACCATGCACCGCCGCTGCTTCCTCCTCTTGTTGCCGTGGCTTCTTCTCCCTCCTCGTGCAGTCACGCCTACACCTTCTTCTTCCTCCATGTGCAAACCTGCTGCTTCTTCTCCTCCCTCCTCAAGCGATGTCGCTGCTGTATCTCCTCCGCCTCCATGAGGTTTTCATCGGTGGTTCTCTTCCTTCCTCGTCCGGTCGCACGCTCGCTTTGGTCGCAAATCGGCGCTCTTCTGCTTCTCCTCTTCCGCGGGCGAGATTTATTCCAAAGGTGAGGACTCTAAAGCCTCAAAGACTAGCATCACAAAATGCACATTCTTGGAGGGAGATTATGAAGTTGGTTGAGGTTAGTGATGATCAGAATTTGCCAAGTTTTGAAGCAAATAATAATAATAATGGAGGTTATGATGGGCAAGGTGATTGGAATATGTACTCTAGATATATGAATCCTGATGGGGGAATGCCGCAGCTTACATGCTTCAGGATCAAGAGGTGCATGCAGCTAAGCTGGAGCGCACGTTCATTGCCATTAAGCCTGATGGAGTGCAGAGAAGGCTGGAAATATGGGTTGGATGACAACACAATTGACTTAATTGGTCATGCATTGGCTCTACACTTGGATGATGCTTACTTACCTCAGCCTGTAGTAGATTTTGTGAGAATTAAGCTACTGGTTTTGGAGCCTTTCTTCAATGTTGTTCATTTTGGCCTTTTTCTTGCTGAGGGTCACACAGCCATGGAGGCCGCAGTAGTCGACGCCGGCTCAAGCCTCCTCAAGGCCGGTTTCGCAATTCCAGATCAATCTCCCGCATTGATAATCCCCACACAGATGAAACGGATGCTTGATGATGGGCCAGTGACTGATAATCTGGTGGTAGACGATGTTGCCATCGATCCTGTGGTGAGAGGCTATGTAAGAGATTGGGATGCAATGGAGGATTTGTTGCATTATGTTTTGTACACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAGATACTATTTACGGATCCACTTTGTACCCCAAAGGCTAACAAGGAACAGTTAGTGCAACTTATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAGGCAGTGTTGTCACTATATGCTGTTGGACGTATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATCGCACCAGTAATTGAAGGTGCTGTTAATCACATAGCTTCAAGAAGATTTGAATTTGGAGGTACTGATCTAACTAATTTCTTGGCTCAAGAACTTGGCAAATCCAATCCGCTGGTGAATATCAGCTTGTCTGATACTGAGAAAATAAAGCAGCAATACTCATGTTGTGCTGAAGATGAGTTAGCTTATCAGAAGATTCAAGGTTCTTGCCCTATGGAGAAACATACGCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACTGTTGGTGAGGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTTCGTACTATTTCAACTGTGTCATCTGATAATCATCGGCAACTTCTCGAAAATACTGTGGTTTGTGGTGGCACTTCTTCAATGACAGGGTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCGTCTGCCATTCGACCTACCCTGGTCAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTACGACGAAACTGGACCTTCCGTCATTCACCGGAAATGCTTCTGA 3318 0.4364 MVLHLVDPTSLAWSSSVSSTAPITCSTKFPNENQTNFTAPKLPLPVVRVVESMKRSSKPASSGLQKDTKKDLSRILRMEAAIKGVENKGNSLKHKQLWPKAVLEALEEAIKGYRWQAALKIFAILRKQHWYEPRCQTYARLLMMLGKCKKPEEASQIFEIMLSEGLKPTVDVYTALVSAYGQSGLLRQAFSTVEDMKSVVDCEPNTYTYSILISCCTKFQCFDLIDRILVEMSYLGIECNNVTYNTIIDGYGKAGMYEHMENSLTDMVESGNCQPDVFTLNSIVGAYGNGGQIDRMEKWYNEFQLMGIKPDIKTFNMMIKSYGKAGMYEKMKSVMDFMERRFFSPTIVTYNTVIEVFGKAGEIEKMDTHFKKMKHLGVKPNSVTYCSLVNAYNKAGRIDKVDSIMRHIVNSDVILDTPFFNCIISTYGQAGDLNKMGELFLEMKDRQCEPDSITFACLIQAYNSHGMTEAARKLENMMITAKDSFESKEGLELLQSSTSPPCTAAASSSCCRGFFSLLVQSRLHLLLPPCANLLLLLLPPQAMSLLYLLRLHEVFIGGSLPSSSGRTLALVANRRSSASPLPRARFIPKVRTLKPQRLASQNAHSWREIMKLVEVSDDQNLPSFEANNNNNGGYDGQGDWNMYSRYMNPDGGMPQLTCFRIKRCMQLSWSARSLPLSLMECREGWKYGLDDNTIDLIGHALALHLDDAYLPQPVVDFVRIKLLVLEPFFNVVHFGLFLAEGHTAMEAAVVDAGSSLLKAGFAIPDQSPALIIPTQMKRMLDDGPVTDNLVVDDVAIDPVVRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISLSDTEKIKQQYSCCAEDELAYQKIQGSCPMEKHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVIHRKCF* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0201 1105 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 670 726 - -
Aev10g0201 1105 Gene3D Tetratricopeptide repeat domain 47 235 IPR011990 GO:0005515
Aev10g0201 1105 SUPERFAMILY Actin-like ATPase domain 745 882 IPR043129 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 348 381 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 420 452 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 242 277 IPR002885 -
Aev10g0201 1105 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Aev10g0201 1105 SUPERFAMILY Actin-like ATPase domain 875 1105 IPR043129 -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Aev10g0201 1105 Pfam GDP dissociation inhibitor 686 722 IPR018203 GO:0005092|GO:0007264
Aev10g0201 1105 SMART actin_3 745 1105 IPR004000 -
Aev10g0201 1105 Pfam PPR repeat 137 166 IPR002885 -
Aev10g0201 1105 Pfam PPR repeat 314 341 IPR002885 -
Aev10g0201 1105 Pfam PPR repeat family 168 216 IPR002885 -
Aev10g0201 1105 Pfam PPR repeat family 417 462 IPR002885 -
Aev10g0201 1105 Pfam PPR repeat family 240 287 IPR002885 -
Aev10g0201 1105 Pfam PPR repeat family 345 392 IPR002885 -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Aev10g0201 1105 Pfam Actin 745 1105 IPR004000 -
Aev10g0201 1105 PRINTS Actin signature 844 857 IPR004000 -
Aev10g0201 1105 PRINTS Actin signature 961 977 IPR004000 -
Aev10g0201 1105 PRINTS Actin signature 869 888 IPR004000 -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Aev10g0201 1105 CDD NBD_sugar-kinase_HSP70_actin 748 910 - -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Aev10g0201 1105 Gene3D Tetratricopeptide repeat domain 262 371 IPR011990 GO:0005515
Aev10g0201 1105 Gene3D Tetratricopeptide repeat domain 372 499 IPR011990 GO:0005515
Aev10g0201 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 47 487 - -
Aev10g0201 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Aev10g0201 1105 Gene3D - 867 1068 - -
Aev10g0201 1105 PANTHER OS03G0115300 PROTEIN 47 487 - -
Aev10g0201 1105 Gene3D - 749 1099 - -
Aev10g0201 1105 Gene3D Actin; Chain A, domain 4 909 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0201 Aev-Chr10 2219002 2238770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0201 745 1105 Cytoskeleton Gene Families AT1G49240 36.675 8.68e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0201 - - aip:107613259 787.719