Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0143 ATGACAGACCCTCACTCCAATTTTTGTGCTAGAGGAAGGTTCAACTTCATGCCCCTCCATCCACCACCACACCACTACTCTTCTCTTTTTCCTCCTCCTCCTCAATCAAATAATACCTACCTCTTCTCATCTTCCTCCTCAAACACCACATCATTATTCTTCTCCAATAATATTCACCAATTTGAAGCCTCCTCCTCCTCCTCTTCCTCTATAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAACACCATGACCCTCAGAAACAACGAATCCTCCTCATCAAACACTGTTTGTGCTGCTGTGGAATTATTAGAGGAGGCTAATAATAACAATACAAAGGACAAGAGAAAAAAGGACAAAGAATACTATGATGAGAGTCTTTTGATGACTGCTAGTACTACCGAAGAAGGAGGTGTTGATGACGACGATGACGACGATGAAGCTGTTACTGTAGCACTGCACATAGGGCTTCCTACTAGTACCAGCACTAATAGGAAGATGAAGATCTACTCATCATCAAAAGAGGAAGTGGTTTCTGAGAAGAACAACCCTCCTTTGATGATGGATAATAGCTTCAACAACAACAATAATAATAATAGTAATAGTAATAGTAAGGCTCAGTATTGGATTCCAACGCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGTCATGTTTGCTCCAAGTCTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGCCCAGATTCTCTAAAAGGAACACAACCAACGGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACAAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTAAAAGATTTCAGGACCCTCCAAACACACTACAAGAGAAAGCACGGCATAAAGCCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCTGTGAAGGGTGATTGGAGGACACACGAGAAAAATTGTGGCAAAATCTGGTATTGTTTGTGTGGCTCTGATTTCAAGCACAAGAGATCCTTGAAAGACCATATAAAGGCCTTCGGTCATGGCCATGGAGCTTTTGGCATTGATTGCATGCAAGAGGAAGATGAAGCTGCCTCTGAAATTGAACATGATGATGGGGATTGCTCTATGTAA 1173 0.4288 MTDPHSNFCARGRFNFMPLHPPPHHYSSLFPPPPQSNNTYLFSSSSSNTTSLFFSNNIHQFEASSSSSSSIAPPSSPPLREALPLINTMTLRNNESSSSNTVCAAVELLEEANNNNTKDKRKKDKEYYDESLLMTASTTEEGGVDDDDDDDEAVTVALHIGLPTSTSTNRKMKIYSSSKEEVVSEKNNPPLMMDNSFNNNNNNNSNSNSKAQYWIPTPSQILIGPTQFSCHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAQGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAFGIDCMQEEDEAASEIEHDDGDCSM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0143 390 PANTHER ZINC FINGER PROTEIN WIP2 43 385 IPR043584 GO:0003700|GO:0010468
Aev10g0143 390 Pfam Zinc finger, C2H2 type 228 247 IPR013087 -
Aev10g0143 390 Gene3D Classic Zinc Finger 290 364 - -
Aev10g0143 390 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Aev10g0143 390 SMART c2h2final6 312 332 IPR013087 -
Aev10g0143 390 SMART c2h2final6 228 250 IPR013087 -
Aev10g0143 390 SMART c2h2final6 338 361 IPR013087 -
Aev10g0143 390 SUPERFAMILY beta-beta-alpha zinc fingers 296 332 IPR036236 -
Aev10g0143 390 SUPERFAMILY beta-beta-alpha zinc fingers 221 250 IPR036236 -
Aev10g0143 390 PANTHER ZINC FINGER PROTEIN WIP2 43 385 - -
Aev10g0143 390 Gene3D Classic Zinc Finger 227 250 - -
Aev10g0143 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 332 IPR013087 -
Aev10g0143 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0143 Aev-Chr10 1417355 1422548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0143 154 387 C2H2 Transcription Factor Family AT3G57670 65.098 1.22e-118 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g0143 zf-C2H2 0.00073 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0143 - - gmx:100794446 434.876