Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0118 ATGGCTGCCACTACTACTCTCCTCTCACCACCCACCTTCCTTTCCTTCACAACCACCCCATCGACTTCTTCTCCCACTCACAATCACGCTTCCACCTCTTTTCACTTCAAACCCGTTCTCAAGTTGGTTCCTTCCCTCGTTGTTGGAGCTCCCTCACAAAGATACAGATACTCTCCTCGGAGACCCTTTGCAGTGGCCGAAGAAGCCGCGGCGGCGGCGGTTACCTCGGTGGATCCGAAGTCCGAGGCTGCCAGGAAGCTCTACGTTGGCAACATTCCCCGCACTGTCACCAACGATGAGCTTAAGAAGATTGTTGAAGAGCATGGCACTGTTGAGAAAACTGAGGTAATGTATGATAAATACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACTGTTGACGATGCAAATGCAGTAATCGAGAAACTTAACGGCACTGAAATTGGAGGACGTGAAGTCAAAGTAAATATCACTGAAATGCCTTTGGCAACAGCAGATTTTCCGTTGCTCCAGGCTGAGGAATCCAATTTTGTTGACAGCCCCCACAAGGTATATGTTGGAAATCTGGCCAAGACAGTAACAACAGATAAACTTAAAAGCTTTTTCTCTGAGAAGGGACAAGTTCTTAGTGCCAAGGTGTCTCGGGTTCCTGGGACCTCAAAATCAACTGGGTTTGGTTTTGTTACTTTTTCTTCAGAAGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGCTAGAAGGGCAAAAAATTCGTGTGAATAAGGCATAG 786 0.4631 MAATTTLLSPPTFLSFTTTPSTSSPTHNHASTSFHFKPVLKLVPSLVVGAPSQRYRYSPRRPFAVAEEAAAAAVTSVDPKSEAARKLYVGNIPRTVTNDELKKIVEEHGTVEKTEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNGTEIGGREVKVNITEMPLATADFPLLQAEESNFVDSPHKVYVGNLAKTVTTDKLKSFFSEKGQVLSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAISSFNNSLLEGQKIRVNKA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0118 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Aev10g0118 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 261 IPR000504 GO:0003723
Aev10g0118 261 SUPERFAMILY RNA-binding domain, RBD 181 261 IPR035979 GO:0003676
Aev10g0118 261 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 261 - -
Aev10g0118 261 Gene3D - 57 164 IPR012677 -
Aev10g0118 261 PANTHER OS02G0815200 PROTEIN 1 261 - -
Aev10g0118 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 257 IPR000504 GO:0003723
Aev10g0118 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Aev10g0118 261 CDD RRM_HP0827_like 86 162 - -
Aev10g0118 261 SUPERFAMILY RNA-binding domain, RBD 77 160 IPR035979 GO:0003676
Aev10g0118 261 SMART rrm1_1 186 259 IPR000504 GO:0003723
Aev10g0118 261 SMART rrm1_1 86 159 IPR000504 GO:0003723
Aev10g0118 261 Gene3D - 173 261 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0118 Aev-Chr10 1177231 1179977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0118 87 261 Eukaryotic Initiation Factors Gene Family AT3G16380 33.520 1.22e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0118 K13126 - gmx:100783567 320.087