Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0100 ATGGCTCGTAAGAGAGACAGCGATAGCGACGAAGACGACATCTTCTACTACCGATTCTGCTCATCTTCCTCAACCCAATCCCAATCCCAAACCCCAACTCAGAACAGAAACCCTAACACTGGATCCTCTCTAATTTCTCCATCATCATCCTCATCTTCGTCCTCAACCTTGGCTCCCTCAAAATCAACCCTTTACGTCTCCAATCTTGACTACTCCCTCACAAACTCCGATCTTCACACTCTCTTCTCCACCTTCGGCCGCGTCGCCCGAGTCACCGTCCTCAAGGACCGCCACACCCGCCTCAGCCGCGGCGTTGCCTTCATCCAGTTCGTATCCCGCGACGACGCCCGCCGCGCTGCCGCTCAGATGCACCACAAGGTCCTCAACGGCCGCACCCTCTCCGCCTCCATCGCCGTTGACAACGGCCGCGCCCCTGAGTTCATCCGCAAGCGCGTCTACAACGACACCGGCCGGTGCTTCGAGTGCGGGCAGCCCGGTCACCTCTCCTACGACTGCCCGAGGAATCAGTTGGGCCCGCGGGAACGCCCCCCTCCCAAGCGTGGCAGGCATGGCGGCGGGGCCAGTGGCCGAGGCGGGAGAGGGTTCCGGCGAAAGGAGGAAGAAGGGGAGGAGGATGATGAGGGTTCGGATGGTGGTGGCGGCGGCGGCGGCGAGCGGTTCGAGGCTGATAATTGGGCTTCGATTGTGGATGATGGCGCGGATGAGAGGCTGTTGGGGAGGAACGAGAAGGTTGTTGCAAAAAAGAAGGCGAAGAAAGCCGGGTACTTCAGCGATGAGAGTGGTGATGAAGATGAGGAATGA 822 0.5973 MARKRDSDSDEDDIFYYRFCSSSSTQSQSQTPTQNRNPNTGSSLISPSSSSSSSSTLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRVARVTVLKDRHTRLSRGVAFIQFVSRDDARRAAAQMHHKVLNGRTLSASIAVDNGRAPEFIRKRVYNDTGRCFECGQPGHLSYDCPRNQLGPRERPPPKRGRHGGGASGRGGRGFRRKEEEGEEDDEGSDGGGGGGGERFEADNWASIVDDGADERLLGRNEKVVAKKKAKKAGYFSDESGDEDEE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0100 273 ProSiteProfiles Zinc finger CCHC-type profile. 158 174 IPR001878 GO:0003676|GO:0008270
Aev10g0100 273 Pfam Zinc knuckle 158 173 IPR001878 GO:0003676|GO:0008270
Aev10g0100 273 Gene3D - 149 184 - -
Aev10g0100 273 CDD RRM_ZCRB1 61 138 IPR034219 -
Aev10g0100 273 MobiDBLite consensus disorder prediction 236 265 - -
Aev10g0100 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Aev10g0100 273 Gene3D - 22 230 IPR012677 -
Aev10g0100 273 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 7 270 - -
Aev10g0100 273 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Aev10g0100 273 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 7 270 IPR044598 GO:0000398|GO:0005689
Aev10g0100 273 SMART rrm2_1 63 136 IPR003954 GO:0003676
Aev10g0100 273 MobiDBLite consensus disorder prediction 21 59 - -
Aev10g0100 273 SMART rrm1_1 63 136 IPR000504 GO:0003723
Aev10g0100 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Aev10g0100 273 MobiDBLite consensus disorder prediction 170 273 - -
Aev10g0100 273 SUPERFAMILY RNA-binding domain, RBD 51 148 IPR035979 GO:0003676
Aev10g0100 273 SUPERFAMILY Retrovirus zinc finger-like domains 140 175 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0100 Aev-Chr10 986208 987029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0100 62 138 Eukaryotic Initiation Factors Gene Family AT4G34110 35.065 2.88e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0100 K13154 - gmx:100814914 302.367