Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0055 ATGTCTGAGATAACGATGGATGAGCCAGTGGAAAGTGATAAAAGACCCGTTTTCAGAGACATCAGACGTTACTTCTGTGAATACTGTGGCATCTGTAGATCCAAAAAGACCTTAATTACCTCTCATATAAATTCACACCACAAGGAGGAGATTGAAAAAAATAGAGCTGAAGGAAATGATGAAGTACAGTGCGTAAAACCCAACAACACTTGCCAGGAGTGTGGTGCTAGTTTCAAAAAACATGCGTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCCTATGTGTGTACTGTTGATGATTGTCAGGCAAGTTACCGAAGAAAGGACCACTTGACTCGTCACCTTCTACAGCACGAAGGGAAAACTTTTAAATGTCCCATTGAGAATTGCAACCTTAATTTCACTTTACAAGGCAATATGAATAGACATATCAAGGAGTGTCATGATGAGGATTTCAAATCTACTAATGTTGAATTTCAGAAAGAGTTTGTGTGCCCAGAAGTTGGCTGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGAAAGCATGAAAATTCTCATGTTAAGCTGGAGTCGGTAGAAATAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACTAATGACCAATGTCTTAAAGCCCATATTGAATCCTGTCATCAATATGTGACTTGTGACACTTGTGGGAGTAAGCAATTGAAGAAGAATATTCAAAGGCACCTTCGTACACATGAAGCTGACGAATCACTAGAGGTGTTTAAGTGTGAATTTAATGGTTGTAGCTGCACATTCTCAAGTAAATCTAATCTTCATAAGCATGAGAAGGCTGTGCACTTGAAAGAAAAGCCTTTTGTCTGCGGCTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAAACATGAAAAAACTGGCACACATGTTTATACCCATGGTGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTTACTCCACCTAGTCAAGTGGAGCACTGGTTATTCATGCAGGACAGTGACTAG 1101 0.4051 MSEITMDEPVESDKRPVFRDIRRYFCEYCGICRSKKTLITSHINSHHKEEIEKNRAEGNDEVQCVKPNNTCQECGASFKKHAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPIENCNLNFTLQGNMNRHIKECHDEDFKSTNVEFQKEFVCPEVGCGKVFKFASKLRKHENSHVKLESVEIVCLEPGCMKHFTNDQCLKAHIESCHQYVTCDTCGSKQLKKNIQRHLRTHEADESLEVFKCEFNGCSCTFSSKSNLHKHEKAVHLKEKPFVCGFPDCGMRFAYKHVRDKHEKTGTHVYTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQVEHWLFMQDSD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0055 366 PANTHER ZINC FINGER PROTEIN 3 355 - -
Aev10g0055 366 SMART c2h2final6 198 223 IPR013087 -
Aev10g0055 366 SMART c2h2final6 166 190 IPR013087 -
Aev10g0055 366 SMART c2h2final6 226 247 IPR013087 -
Aev10g0055 366 SMART c2h2final6 24 46 IPR013087 -
Aev10g0055 366 SMART c2h2final6 97 121 IPR013087 -
Aev10g0055 366 SMART c2h2final6 256 281 IPR013087 -
Aev10g0055 366 SMART c2h2final6 287 313 IPR013087 -
Aev10g0055 366 SMART c2h2final6 126 151 IPR013087 -
Aev10g0055 366 SMART c2h2final6 69 91 IPR013087 -
Aev10g0055 366 Gene3D Classic Zinc Finger 11 96 - -
Aev10g0055 366 PANTHER - 3 355 - -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 156 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Aev10g0055 366 Gene3D Classic Zinc Finger 284 310 - -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 289 313 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 168 190 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 200 223 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 99 121 IPR013087 -
Aev10g0055 366 Pfam Zinc finger, C2H2 type 97 121 IPR013087 -
Aev10g0055 366 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Aev10g0055 366 Pfam Zinc finger, C2H2 type 70 91 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 128 151 IPR013087 -
Aev10g0055 366 SUPERFAMILY beta-beta-alpha zinc fingers 237 291 IPR036236 -
Aev10g0055 366 SUPERFAMILY beta-beta-alpha zinc fingers 124 152 IPR036236 -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 286 IPR013087 -
Aev10g0055 366 SUPERFAMILY beta-beta-alpha zinc fingers 83 123 IPR036236 -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Aev10g0055 366 ProSitePatterns Zinc finger C2H2 type domain signature. 258 281 IPR013087 -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 126 IPR013087 -
Aev10g0055 366 Gene3D Classic Zinc Finger 224 283 - -
Aev10g0055 366 Gene3D Classic Zinc Finger 97 121 - -
Aev10g0055 366 Gene3D Classic Zinc Finger 164 190 - -
Aev10g0055 366 Gene3D Classic Zinc Finger 122 163 - -
Aev10g0055 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0055 73 316 C2H2 Transcription Factor Family AT1G72050 44.569 1.43e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g0055 zf-C2H2 0.00086 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0055 K09191 - gmx:100801812 588.956