Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g0013 ATGGCTTCCATATCCAAGGGGCGAGATAAGCATCCTGTGTCTGCAATCCTTTTCTTTAAGATCATACTTGGAAAAACACTTGAAGATGGGAAGCTTAAATTGCCAAACAGTTTCACAAGAAAATATGGCAATGGTCTGCCAAAACAAGTGTTCCTGAAGCCTCCTGATGGCACAGAATGGAGAGTATGTTGGACTAAGCATGATGATGAGATTTTGCTTGAAAAGGGTTGGAAGGAGTTTGCTACATATTACTCTCTAGGTCATGGGTACTTGGTGTTGTTTCAGTACAAGGAAACCTCTCATTTAGAGGTACACATATTTGACTTGAGTGGCCTTGAAATAGACTATGATGAGAAAGTTCAAATTTTGGATGAGATGCCTACAAGCCTGAACACCAAACTCAAGAAATCACAAGTGTTTTCTTCTCCTCAACCATGTAAGAAGCTCAGAACTGGAACAGCTGAAGATGCTAGAACAAGCTACAATTTTCAAAATCTGCCTCAGCTTGACCAAATTAATGGTTCTCAGTCTCAAGGGACTAACTTGGAGAAGTCAACATTTGTATCTGTCAAGAAAGAATTGGATGAGGATATAAGTGGTGTCACTCAATGTCCACAAGTGGAGCAGTCTAATATAGTAACTGAAGAATTTAACAGAGCCGAAACTACTTTCAGATCTAGAAATCCCTCTTTCATGATTGTCATGAAACGTTCCTATGCTAATAATTACACTTTGCATGTCCCTTCAAATTTTTCAGAAGTATATTTGAAGGATAAGCAAGGGCCTACCCTCGTTGAGGTTCAGGTTCAGGATGGGAGAACTTGGACTATCTCTTATAGCCTAGGAAAATTCAATTCCGGATGGAAGAGATTTGCATCAGATAATAATTTGAATGTGGGGGATATTTTGATTTTTGAGCTCACTGATCGCAAAGACCTTTCTTTTAAAGTATCAATATCTCGAGCTGCACAACCACCAAGCTGCCGTGTATCACAAGTTGAAGGAGATGGAATCAACTTGTTAGACCCTGGAAGAGTCGAGTACGTGGATAGTAAAGCTGACATTACAATTATAAATAGAGGTAGAAAGGAAGCTCAAAGAACTTCAATGGTGATTGGTACTGACTCTAGCTCAAATGAAGCTATGAGAAAAGCTGTGAAATTCACATCAGAAAATCCCTATTTTATATCAAGTATAAAGCTGAGCTTTCAGGGAACAGACAGACCGCGTGTACCAAATGTCTTCATAAAAAATTACCTCATCGAGAATGAAAAGCAGGTCCTGACGTTACGGTTAGGGAATAAATTGTGGCCAGTAACGTTGTTGAGTTATTCATACTTAACTTCAAGCAAGATGTCCAATGGTTGGAGCCTATTTGCTAAGGAAGCTGAATTGCAAGTTGGGGATGTTTGTATCTTTGAGCTCATAAACAGAGATGATGCAGTGTTCGATGTTCACATTTTCAGATGTAACAACTAG 1479 0.3922 MASISKGRDKHPVSAILFFKIILGKTLEDGKLKLPNSFTRKYGNGLPKQVFLKPPDGTEWRVCWTKHDDEILLEKGWKEFATYYSLGHGYLVLFQYKETSHLEVHIFDLSGLEIDYDEKVQILDEMPTSLNTKLKKSQVFSSPQPCKKLRTGTAEDARTSYNFQNLPQLDQINGSQSQGTNLEKSTFVSVKKELDEDISGVTQCPQVEQSNIVTEEFNRAETTFRSRNPSFMIVMKRSYANNYTLHVPSNFSEVYLKDKQGPTLVEVQVQDGRTWTISYSLGKFNSGWKRFASDNNLNVGDILIFELTDRKDLSFKVSISRAAQPPSCRVSQVEGDGINLLDPGRVEYVDSKADITIINRGRKEAQRTSMVIGTDSSSNEAMRKAVKFTSENPYFISSIKLSFQGTDRPRVPNVFIKNYLIENEKQVLTLRLGNKLWPVTLLSYSYLTSSKMSNGWSLFAKEAELQVGDVCIFELINRDDAVFDVHIFRCNN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g0013 492 SUPERFAMILY DNA-binding pseudobarrel domain 226 323 IPR015300 -
Aev10g0013 492 CDD B3_DNA 17 108 IPR003340 GO:0003677
Aev10g0013 492 SUPERFAMILY DNA-binding pseudobarrel domain 16 110 IPR015300 -
Aev10g0013 492 CDD B3_DNA 229 321 IPR003340 GO:0003677
Aev10g0013 492 SUPERFAMILY DNA-binding pseudobarrel domain 388 491 IPR015300 -
Aev10g0013 492 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Aev10g0013 492 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 322 - -
Aev10g0013 492 PANTHER B3 DOMAIN-CONTAINING 12 322 - -
Aev10g0013 492 PANTHER B3 DOMAIN-CONTAINING 367 490 - -
Aev10g0013 492 SMART B3_2 231 323 IPR003340 GO:0003677
Aev10g0013 492 SMART B3_2 18 110 IPR003340 GO:0003677
Aev10g0013 492 SMART B3_2 394 491 IPR003340 GO:0003677
Aev10g0013 492 ProSiteProfiles B3 DNA-binding domain profile. 230 323 IPR003340 GO:0003677
Aev10g0013 492 CDD B3_DNA 393 489 IPR003340 GO:0003677
Aev10g0013 492 Gene3D - 373 492 IPR015300 -
Aev10g0013 492 Gene3D - 212 324 IPR015300 -
Aev10g0013 492 Gene3D - 13 111 IPR015300 -
Aev10g0013 492 Pfam B3 DNA binding domain 400 489 IPR003340 GO:0003677
Aev10g0013 492 Pfam B3 DNA binding domain 231 322 IPR003340 GO:0003677
Aev10g0013 492 Pfam B3 DNA binding domain 26 108 IPR003340 GO:0003677
Aev10g0013 492 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 367 490 - -
Aev10g0013 492 ProSiteProfiles B3 DNA-binding domain profile. 394 491 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g0013 Aev-Chr10 128176 135292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g0013 374 492 B3 DNA Binding Superfamily AT3G18990 32.231 9.61e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev10g0013 B3 3.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g0013 - - adu:107471690 498.049