Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2792 ATGGCGTCGATGTTGCCGTACAGCGATGTAGATTCGAACTTGAGGGCCATGGCTGGTCGTGCCGAGGGTTTCGGCCGCCACTCCATCGGCGGTCTCCACGGATCTCTCTATTTCGTCACCTCTCTTGCAGATGATGGTCCTGGGTCCCTTCGTGAAGGATGCCGGAGAAAAGAACCCCTATGGATTGTTTTTGAAGTTTCAGGTACAATTCAACTTTCATCATACCTGAGTGTGTCATCTTACAAGACTATAGATGGCAGAGGGCAGAGGATAAAGCTAACTGGAAAAGGCTTAAGGCTGAAAGAATGTGAGCATATAATTATATGCAACCTTGAGTTTGAGGGTGGTAGGGGCCATGATGTAGATGGCGTTCAAATAAAACCAAACTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGACTTATAGACATTACTAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTCGCGCAGCATGACAAGACTATGCTAATTGGAGCTGACCCATCTCACGTTGACGATAGATGCATCCGGGTTACAATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGGAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCAAGTGTTGAATCTCAGATATACTCTCACTGCAACATATATGAAGCAGGAGCGAAGAAAAAGACTTTTGAGTTTTATACTGAGAAGGCTGCAGATAAGGAAGAGGCAAAGTCTGGGATTATAGTATCTGAAGGAGATATGTTTCTGAATGGTGCTCAGCCATGCTCACTAAAAGAATACAAAGAATCCGTGTTCCATCCTAGTGAGTATTACCCAACATGGACGATGGAAGCAGCTCAACATTCTCTGAGAGAAATCCTCCAAATATGTACGGGTTGGCAGTCCATTTGCAGGCCAGTAGACAATATGGTCTCGAACTAA 996 0.4408 MASMLPYSDVDSNLRAMAGRAEGFGRHSIGGLHGSLYFVTSLADDGPGSLREGCRRKEPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGVQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVDDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSHCNIYEAGAKKKTFEFYTEKAADKEEAKSGIIVSEGDMFLNGAQPCSLKEYKESVFHPSEYYPTWTMEAAQHSLREILQICTGWQSICRPVDNMVSN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2792 331 PANTHER PECTATE LYASE 18-RELATED 3 325 IPR045032 GO:0030570
Aev09g2792 331 Coils Coil 330 331 - -
Aev09g2792 331 Gene3D - 5 316 IPR012334 -
Aev09g2792 331 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Aev09g2792 331 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Aev09g2792 331 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Aev09g2792 331 SMART amb_all 47 245 IPR002022 -
Aev09g2792 331 PANTHER PECTATE LYASE 3 325 - -
Aev09g2792 331 SUPERFAMILY Pectin lyase-like 18 283 IPR011050 -
Aev09g2792 331 Pfam Pectate lyase 75 237 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2792 Aev-Chr9 28366554 28368528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2792 42 329 Polysaccharide Lyase AT3G55140 82.699 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2792 K01728 - gmx:100802068 616.69