Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2778 ATGGTTCTTTCGAACAAGAAGCTGAAGCTTAAGCTTAGGGCTGAACTATCCCAGAAAGAAGGCAACTACGAAACCGTTGATGCTCCTTCTTCTTCTCCCAACTCTCTCAAGACTCTTCTGGACTCTTCCGCCCACAAACCCAGATTGTCCAAGAGAGAGAAACATCGAAAGGTTCGATCTTTGCAGCACCCTCAATCCGAAACAGCCCCTGAAGCTGGTGATGAAGTTGAAGGGACCAAGAAGGAAACTGGGTCGGAGGGTTCGAGCAATAAGAAGAACAAGAAGAGGAAAAGGAAGGTAGAGGAGGGTGATTTGGAAAATGGGACTCCCAACGATGCCAAGAAATCAAAGAACAAGAAAAAGAAGCAGAAGCAGAAGAAAAAGAAGCCCAAACCAGTGGAGCAAAACAGTTCTAATAACGGAGAGGAAGTTCAAGAGTCTACAGGGTTAAACAAGAGTACTAATACCACTACCAGTCAGGAGGGTGGTGATCCTACAAAAGTTTATGTTGGAGGAATTCCATATTATTCAACTGAGGATGATATTCGAAGTTACTTTGAAGGCTGTGGCACCATTACTGAAATTGATTGCATGTATTTTCCCGAAAGTGGGAAGTTTAGAGGCATTGCCATTATTAGTTTTAAGACAGAAGCAGCAGCTAAACGAGCACTCGCACTTGATGGAGCTGACATGGGAGGACTCTATCTTAAAATCCAACCACATAAAGCAACTCGTCCCACTAAAGTATCAGATTTTGCTCCGAAGATTATGGAGGGATACAATAGAATATATGTAGGAAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCTCAAATTGCAATATAACATCCCTACGATTTGGCATGGACAAGGACACCGGGGAATTCAGAGGATACGCCCATGTGAATTTCAGTGATAGCGAGTCACTGAAAACAGCACTTACATTGGACCAAAAGGGAAGTTTGAAACGCTTTGAGGCCCGCTTGGATCGTGTGGAAGCCAAGTATCATCAAGAACGTTGTTGGAGTCGTGTCAATGCTCCACAATACTATGTCGGTCAAGAACTTCGCCAGAATCAAGGACCATTGATCGGGAAGACGATGGACAAGGAGAAGGATAAAGAAGATCTAGCGAAGGGAAGTCGAGTGACAAACCTGAAAACGATATTTGGATGGGCAAGAAAATGTATCACGGTGACGACAGCAACTATGGAAAGCACGAGCAGAATGGATCGAATAGAAGAGGAGTCTCGCAATCGAGGAGATCGCAACCCTGACTGCGATACTCGTCGATGCGACCCACGATACATCGACCATCCACCACTTCCACAGAGCGAGTGCGATTGGGGATGGGGGTGGAATGACCCCACATGGTTACCGATGAAAGAAGGTCGAGGGGTGGGGAGCGTCGAAGAGGGAGAAAAGAAGCAACCTGAGTCTTGA 1455 0.4536 MVLSNKKLKLKLRAELSQKEGNYETVDAPSSSPNSLKTLLDSSAHKPRLSKREKHRKVRSLQHPQSETAPEAGDEVEGTKKETGSEGSSNKKNKKRKRKVEEGDLENGTPNDAKKSKNKKKKQKQKKKKPKPVEQNSSNNGEEVQESTGLNKSTNTTTSQEGGDPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLYLKIQPHKATRPTKVSDFAPKIMEGYNRIYVGNLSWDITEEELRKFFSNCNITSLRFGMDKDTGEFRGYAHVNFSDSESLKTALTLDQKGSLKRFEARLDRVEAKYHQERCWSRVNAPQYYVGQELRQNQGPLIGKTMDKEKDKEDLAKGSRVTNLKTIFGWARKCITVTTATMESTSRMDRIEEESRNRGDRNPDCDTRRCDPRYIDHPPLPQSECDWGWGWNDPTWLPMKEGRGVGSVEEGEKKQPES* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2778 484 MobiDBLite consensus disorder prediction 23 41 - -
Aev09g2778 484 MobiDBLite consensus disorder prediction 17 169 - -
Aev09g2778 484 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 66 323 - -
Aev09g2778 484 SUPERFAMILY RNA-binding domain, RBD 159 244 IPR035979 GO:0003676
Aev09g2778 484 MobiDBLite consensus disorder prediction 134 164 - -
Aev09g2778 484 Gene3D - 255 344 IPR012677 -
Aev09g2778 484 MobiDBLite consensus disorder prediction 97 114 - -
Aev09g2778 484 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 66 323 - -
Aev09g2778 484 SUPERFAMILY RNA-binding domain, RBD 254 321 IPR035979 GO:0003676
Aev09g2778 484 MobiDBLite consensus disorder prediction 73 90 - -
Aev09g2778 484 MobiDBLite consensus disorder prediction 115 129 - -
Aev09g2778 484 MobiDBLite consensus disorder prediction 462 484 - -
Aev09g2778 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Aev09g2778 484 SMART rrm1_1 262 334 IPR000504 GO:0003723
Aev09g2778 484 SMART rrm1_1 167 239 IPR000504 GO:0003723
Aev09g2778 484 CDD RRM1_PHIP1 168 239 IPR034361 -
Aev09g2778 484 MobiDBLite consensus disorder prediction 412 440 - -
Aev09g2778 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 343 IPR000504 GO:0003723
Aev09g2778 484 Gene3D - 106 239 IPR012677 -
Aev09g2778 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 322 IPR000504 GO:0003723
Aev09g2778 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Aev09g2778 484 MobiDBLite consensus disorder prediction 410 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2778 Aev-Chr9 28301186 28304564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2778 168 317 Eukaryotic Initiation Factors Gene Family AT2G36660 28.750 3.99e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2778 - - adu:107467708 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2778 09 28301186 28304564 Aev09g2778 09 28301186 28304564 ECH