Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev09g2705 | ATGATGGATTTCGATGAATATGAGTATTTAGAGAAAGCAGTTGAGAACCCTGAACTTAAGAAAGAGAAGGAAACCACTAATGGTAGGAATGGAGCTGCCAAGTCTGAAGAGAGAGGCCATGGTCGGAGTTCTAGGCATAAGGACAATGAAGATGATGATGATCACCGCTCAAAGCGATCCAAATCTGGTGATGGCTCTCGCGACCATGACAGGCACAAACAAAGAGGGTTGTGGGGTCATCACTTGCGGTCCGGAGATCGTGACGTGGAGAAGGAAGAGCGCAGGAGCTCTAGGGGCAGTAGTGATAGGAAGAAGAGAGATAGAGCAAGAGACAATGTCGATGAGGACAAGCATGGAAGGGAAAGAGACAGAGAACGGGAACGTGGCCGTGAAAGAGAAAAGAGAGAATGTGGGAGTGAGAGTGAAAGGGAAAGGGAAAGGGAGAAAGAGAGCTCACGACAAACCAGAAGTAGATCTGAAAGGCATCGAAGTGATCCTGTTGACAAAGAGAGAGACAGAGAAAGGAGCCGTGATAGGGACCATAGGGATAAAGAAAGAAGCCGGGATAAGGATTACAGGGACAGAGAAAGTGTGAGGGAATCAAGGGAACGTGACAGAGAAAGCAGATATGGTACAGCAGTTGTTGGATGGTCTATCTGGCAATTGGGCCAGACACTGGAACCTCAGCTCATGGGTTTCAAAAGTTTCTCCCTTCTGGAGTGTATAAGAAAGAATGTTGCAGGATTTGGGGGGCATCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAGAGAGATGTGTATGAGTTCTTTTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCTATGGCTATAGCGCTTTCTGGCCAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCTGAAGCAGAAAAGAATTTAGTTCAGTCCACAACAGCTGTTGTTGCTGGACCTGCTGGACTCATAGGTCCATATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATGACTGAAGTTGATCTTCGTAGGGTGTTTGAAGCATTCGGTCAAGTTGAGCTAGTCCAGTTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATCCAAGAAGTTGGAGGCAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCTAGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCTAGCATGACTGGTTCCCTTGGTAACTCTGTTGTCAACAACAATCTACCAGCAACAGGAAACATACCAACAGCAACTCTTCTGGGAGCTGCACCTGTGGTTTCGTCCATTTCTTCTGTTTCTACTGTATCTGGACTTGCAGGTGCAGGTCTTCAAGTTCCGACAGCTATGATTCCCTCTATTGATACAATTGGTGTTCCAAGCGAGTGCTTACTGTTGAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAAGTTAAAACACATATATGTTGATAAGAATAGTGCTGGTTTTGTCTACTTGCGATTTGAAAATGCTCAATCCGCAATAGGCGCGCAGCGGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTACCACCGGCATACGAGGATAAATTCCCAGACAGCAGATGA | 1977 | 0.4568 | MMDFDEYEYLEKAVENPELKKEKETTNGRNGAAKSEERGHGRSSRHKDNEDDDDHRSKRSKSGDGSRDHDRHKQRGLWGHHLRSGDRDVEKEERRSSRGSSDRKKRDRARDNVDEDKHGRERDRERERGREREKRECGSESEREREREKESSRQTRSRSERHRSDPVDKERDRERSRDRDHRDKERSRDKDYRDRESVRESRERDRESRYGTAVVGWSIWQLGQTLEPQLMGFKSFSLLECIRKNVAGFGGHHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVVAGPAGLIGPYSGGARRLYVGNLHFNMTEVDLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGIQEVGGNTGDFDDDEGGGLSLNASSRAILMQKLDRSGTASSMTGSLGNSVVNNNLPATGNIPTATLLGAAPVVSSISSVSTVSGLAGAGLQVPTAMIPSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIYVDKNSAGFVYLRFENAQSAIGAQRALHGRWFAGKMITASFMVPPAYEDKFPDSR* | 659 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev09g2705 | 658 | SMART | rrm2_1 | 377 | 449 | IPR003954 | GO:0003676 | |
Aev09g2705 | 658 | SMART | rrm2_1 | 565 | 643 | IPR003954 | GO:0003676 | |
Aev09g2705 | 658 | MobiDBLite | consensus disorder prediction | 1 | 207 | - | - | |
Aev09g2705 | 658 | CDD | RRM3_RBM39_like | 563 | 645 | - | - | |
Aev09g2705 | 658 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 252 | 656 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Aev09g2705 | 658 | CDD | RRM1_RBM39_like | 273 | 345 | - | - | |
Aev09g2705 | 658 | Gene3D | - | 559 | 658 | IPR012677 | - | |
Aev09g2705 | 658 | SMART | rrm1_1 | 273 | 345 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | SMART | rrm1_1 | 565 | 643 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | SMART | rrm1_1 | 377 | 449 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | Gene3D | - | 265 | 357 | IPR012677 | - | |
Aev09g2705 | 658 | SUPERFAMILY | RNA-binding domain, RBD | 267 | 352 | IPR035979 | GO:0003676 | |
Aev09g2705 | 658 | Gene3D | - | 372 | 478 | IPR012677 | - | |
Aev09g2705 | 658 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 564 | 647 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 2 | 657 | - | - | |
Aev09g2705 | 658 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 376 | 453 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | SUPERFAMILY | RNA-binding domain, RBD | 376 | 650 | IPR035979 | GO:0003676 | |
Aev09g2705 | 658 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 467 | 582 | IPR029123 | - | |
Aev09g2705 | 658 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 349 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 588 | 640 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 282 | 341 | IPR000504 | GO:0003723 | |
Aev09g2705 | 658 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 378 | 447 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev09g2705 | Aev-Chr9 | 27897905 | 27904278 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev09g2705 | 273 | 439 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 4.89e-13 | 70.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev09g2705 | K13091 | - | gmx:100789839 | 751.895 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev09g2705 | 09 | 27897905 | 27904278 | Aev09g2705 | 09 | 27897905 | 27904278 | ECH |