Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2705 ATGATGGATTTCGATGAATATGAGTATTTAGAGAAAGCAGTTGAGAACCCTGAACTTAAGAAAGAGAAGGAAACCACTAATGGTAGGAATGGAGCTGCCAAGTCTGAAGAGAGAGGCCATGGTCGGAGTTCTAGGCATAAGGACAATGAAGATGATGATGATCACCGCTCAAAGCGATCCAAATCTGGTGATGGCTCTCGCGACCATGACAGGCACAAACAAAGAGGGTTGTGGGGTCATCACTTGCGGTCCGGAGATCGTGACGTGGAGAAGGAAGAGCGCAGGAGCTCTAGGGGCAGTAGTGATAGGAAGAAGAGAGATAGAGCAAGAGACAATGTCGATGAGGACAAGCATGGAAGGGAAAGAGACAGAGAACGGGAACGTGGCCGTGAAAGAGAAAAGAGAGAATGTGGGAGTGAGAGTGAAAGGGAAAGGGAAAGGGAGAAAGAGAGCTCACGACAAACCAGAAGTAGATCTGAAAGGCATCGAAGTGATCCTGTTGACAAAGAGAGAGACAGAGAAAGGAGCCGTGATAGGGACCATAGGGATAAAGAAAGAAGCCGGGATAAGGATTACAGGGACAGAGAAAGTGTGAGGGAATCAAGGGAACGTGACAGAGAAAGCAGATATGGTACAGCAGTTGTTGGATGGTCTATCTGGCAATTGGGCCAGACACTGGAACCTCAGCTCATGGGTTTCAAAAGTTTCTCCCTTCTGGAGTGTATAAGAAAGAATGTTGCAGGATTTGGGGGGCATCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAGAGAGATGTGTATGAGTTCTTTTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCTATGGCTATAGCGCTTTCTGGCCAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCTGAAGCAGAAAAGAATTTAGTTCAGTCCACAACAGCTGTTGTTGCTGGACCTGCTGGACTCATAGGTCCATATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATGACTGAAGTTGATCTTCGTAGGGTGTTTGAAGCATTCGGTCAAGTTGAGCTAGTCCAGTTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATCCAAGAAGTTGGAGGCAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCTAGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCTAGCATGACTGGTTCCCTTGGTAACTCTGTTGTCAACAACAATCTACCAGCAACAGGAAACATACCAACAGCAACTCTTCTGGGAGCTGCACCTGTGGTTTCGTCCATTTCTTCTGTTTCTACTGTATCTGGACTTGCAGGTGCAGGTCTTCAAGTTCCGACAGCTATGATTCCCTCTATTGATACAATTGGTGTTCCAAGCGAGTGCTTACTGTTGAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAAGTTAAAACACATATATGTTGATAAGAATAGTGCTGGTTTTGTCTACTTGCGATTTGAAAATGCTCAATCCGCAATAGGCGCGCAGCGGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTACCACCGGCATACGAGGATAAATTCCCAGACAGCAGATGA 1977 0.4568 MMDFDEYEYLEKAVENPELKKEKETTNGRNGAAKSEERGHGRSSRHKDNEDDDDHRSKRSKSGDGSRDHDRHKQRGLWGHHLRSGDRDVEKEERRSSRGSSDRKKRDRARDNVDEDKHGRERDRERERGREREKRECGSESEREREREKESSRQTRSRSERHRSDPVDKERDRERSRDRDHRDKERSRDKDYRDRESVRESRERDRESRYGTAVVGWSIWQLGQTLEPQLMGFKSFSLLECIRKNVAGFGGHHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVVAGPAGLIGPYSGGARRLYVGNLHFNMTEVDLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGIQEVGGNTGDFDDDEGGGLSLNASSRAILMQKLDRSGTASSMTGSLGNSVVNNNLPATGNIPTATLLGAAPVVSSISSVSTVSGLAGAGLQVPTAMIPSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIYVDKNSAGFVYLRFENAQSAIGAQRALHGRWFAGKMITASFMVPPAYEDKFPDSR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2705 658 SMART rrm2_1 377 449 IPR003954 GO:0003676
Aev09g2705 658 SMART rrm2_1 565 643 IPR003954 GO:0003676
Aev09g2705 658 MobiDBLite consensus disorder prediction 1 207 - -
Aev09g2705 658 CDD RRM3_RBM39_like 563 645 - -
Aev09g2705 658 TIGRFAM SF-CC1: splicing factor, CC1-like family 252 656 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aev09g2705 658 CDD RRM1_RBM39_like 273 345 - -
Aev09g2705 658 Gene3D - 559 658 IPR012677 -
Aev09g2705 658 SMART rrm1_1 273 345 IPR000504 GO:0003723
Aev09g2705 658 SMART rrm1_1 565 643 IPR000504 GO:0003723
Aev09g2705 658 SMART rrm1_1 377 449 IPR000504 GO:0003723
Aev09g2705 658 Gene3D - 265 357 IPR012677 -
Aev09g2705 658 SUPERFAMILY RNA-binding domain, RBD 267 352 IPR035979 GO:0003676
Aev09g2705 658 Gene3D - 372 478 IPR012677 -
Aev09g2705 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 564 647 IPR000504 GO:0003723
Aev09g2705 658 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 657 - -
Aev09g2705 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 376 453 IPR000504 GO:0003723
Aev09g2705 658 SUPERFAMILY RNA-binding domain, RBD 376 650 IPR035979 GO:0003676
Aev09g2705 658 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 467 582 IPR029123 -
Aev09g2705 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 349 IPR000504 GO:0003723
Aev09g2705 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 588 640 IPR000504 GO:0003723
Aev09g2705 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 341 IPR000504 GO:0003723
Aev09g2705 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 447 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2705 Aev-Chr9 27897905 27904278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2705 273 439 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 4.89e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2705 K13091 - gmx:100789839 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2705 09 27897905 27904278 Aev09g2705 09 27897905 27904278 ECH