Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2660 ATGCTTCTTCGTATCAGCTGCATTCTTTTAATGTGCCTACTGCTTAGCTCATTCTCTCCCCCAATCAAAGCTCTCAACCTCACCTTGCCCCACCAACACCCTTTCCCTGAATCTGTCGTTCATCAAGTTCAACGGACAATCAATGCTTCAATTTATAGAAGGGAGCTTCTCTCAAAGGACAACCAAGCTCCATGCCTCACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCAAACTGGGCGGCGAACCGGCAGCGCCTCGCTGACTGCGCCATCGGCTTCGGCCGCGACGCAATGGGCGGAAAAGGCGGCCAGATCTACGTCGTAACGGACTCCTCCGACAACGACCCAGCAAACCCCGTTCCAGGAACCCTCCGCCACGCCGTGATCCAAGACGTACCTCTGTGGATCGTGTTCTCCGCCGACATGACCATAAACCTAAAACACGAGCTCATCTTCAACAGCTTCAAGACCGTCGACGGGCGCGGCGCCAACGTCCACATCACCGGCCACGGGTGTATCACACTCCAGTACGTGTCCAACGTCATCCTCCACAACATCCACGTCCACCACTGCAAACCCTCAGGGAACACTAACATACGGTCATCCCCAACACACGTTGGGTGGAGGGGCAGATCGGACGGCGATGGGATATCGATATTTGGGGCCAGGAAGATCTGGATCGACCATTGCTCGCTTTCTTACTGCACTGATGGGTTGATCGATGCGATAATGGGGTCCACTGGGATCACCATATCGAACAACCACTTTGCGCACCATGACGAGGTGATGCTGTTGGGTCACGATGATAGGTACTTGCCGGACAGAGGGATGCAGGTCACAATCGCGTTCAATCACTTCGGAGAGGGGTTGGTGCAGAGAATGCCGAGGTGCAGGTTGGGCTATATTCATGTCGTCAACAATGATTTCACTCAGTGGGAGATGTATGCCATCGGCGGCAGTGCTAACCCCACCATCAACAGCCAGGGTAACCGCTACACCGCCCCCTCCGATCCTAATGCCAAGGAGGTGACGAAGCGCGTGGAGACGGATGAGAGACAATGGAGCGGTTGGAATTGGAGGACAGATGGGGACATAATGGTAAATGGAGCGTTCTTCGTGCCATCAGGGGCAGGGCTCAGCGCTCAGTACGCAGAGGCATCCAGCTTGCAACCCAAATCCGCCGTCCAAATCGACCAGCTCACCATGTACTCCGGCGTCTTCGGCGATCCCAGGGATAATGGGGATTTGTATCCCGGTTTCAACGGGGGTGGGACCGTGACGAGCGCCACCAACAAGGGTGGCAGCAACGCGGGGTCCAGCGGCGGCAGTGGTGACGGAGACTTCTTCGGAATGATATTCGGAGATCCAAAGCTATTCCATGTGAAGTTTTCTAATAAGCTGACCAATTCCCAATCTGATCTGAAGACAATGGAAGAGAAGAGCAAGGAGAAGAAGAAGAAGAAGATAGGGTACAAGTGGTTGAAGTGGCATTTCTCATGCCATGTCAACTTCACTTGTCTTTCTCTTTCTCTTTAA 1542 0.5415 MLLRISCILLMCLLLSSFSPPIKALNLTLPHQHPFPESVVHQVQRTINASIYRRELLSKDNQAPCLTGNPIDDCWRCDPNWAANRQRLADCAIGFGRDAMGGKGGQIYVVTDSSDNDPANPVPGTLRHAVIQDVPLWIVFSADMTINLKHELIFNSFKTVDGRGANVHITGHGCITLQYVSNVILHNIHVHHCKPSGNTNIRSSPTHVGWRGRSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDRYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDERQWSGWNWRTDGDIMVNGAFFVPSGAGLSAQYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTSATNKGGSNAGSSGGSGDGDFFGMIFGDPKLFHVKFSNKLTNSQSDLKTMEEKSKEKKKKKIGYKWLKWHFSCHVNFTCLSLSL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2660 513 Pfam Pectate lyase 151 332 IPR002022 -
Aev09g2660 513 PANTHER PECTATE LYASE 18-RELATED 7 430 IPR045032 GO:0030570
Aev09g2660 513 SMART amb_all 143 340 IPR002022 -
Aev09g2660 513 PANTHER PECTATE LYASE 7 430 - -
Aev09g2660 513 Gene3D - 68 410 IPR012334 -
Aev09g2660 513 SUPERFAMILY Pectin lyase-like 50 383 IPR011050 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Aev09g2660 513 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Aev09g2660 513 Coils Coil 469 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2660 Aev-Chr9 27640940 27646694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2660 1 418 Polysaccharide Lyase AT3G53190 69.267 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2660 K01728 - gmx:100808438 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2660 09 27640940 27646694 Aev09g2660 09 27640940 27646694 ECH