Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2654 ATGGCTGGGAAAGAAGAGAATCGAATATTCGTCGGAGGATTAGCTTGGGACGTTACTGAGCGTCAACTCGAGCATGCCTTTGGCCGTTATGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGAGATACAGGTCGTCCACGCGGATTTGGGTTTATTACATTTTCAGACCGTAGATCAATGGAGGATGCAATCAAGGAAATGCATGGACGAGAAATTGGTGATCGCATCATCTCAGTCAATAAGGCTCAGCCCAAGATGGGAGGTGATGATGCAGACCACGGTTACAGGGGTAGCTACCCGTCAGGTGGTAGGGGAAGCTATGGGGTTGGAGATAGGGTTGGACAGGATGATTGCTTCAAATGTGGACGTCCAGGGCACTGGGCCCGTGATTGCCCATTGGCAGGAGGTGGTCGTGGTCGGGGTGGTAGTTCATTTTCTTCACGCCCTAGGTTTGGAGGTGTAGGTGGACATGGCGATCGCCTCAGTGGTGAACGTGATCGATACCTTGATGATCGTTATGATGGAGGACGATATGGGGATAGGGATCGTTTTGATGCCCGAGATTACAAATATGGCAGTCGTGATCGCTATACCAGTGACAGGTATCCAACCAGTGGAGATCGATTTGCTAGTGATCGGTACGGTGGTGGCTCAGATAATTACCCACAAAACGGTTATGGCAAAGAGAGAGGCTATGACCGTTACAGTGGTCCACGAGGTGGCAGTGATAGGTATGGAAGTGGGATGCCAGCTCGGGATGAAGGAAAGAGTTATAGGAGTAGGCCTGGTCCGTATGACCGCCCAAGCCGCAGTGCTCGTCCGTCCTCATTCGACCGCTACTGA 846 0.5106 MAGKEENRIFVGGLAWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFSDRRSMEDAIKEMHGREIGDRIISVNKAQPKMGGDDADHGYRGSYPSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFSSRPRFGGVGGHGDRLSGERDRYLDDRYDGGRYGDRDRFDARDYKYGSRDRYTSDRYPTSGDRFASDRYGGGSDNYPQNGYGKERGYDRYSGPRGGSDRYGSGMPARDEGKSYRSRPGPYDRPSRSARPSSFDRY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2654 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Aev09g2654 281 PANTHER TRANSFORMER-2-RELATED 1 240 - -
Aev09g2654 281 MobiDBLite consensus disorder prediction 160 203 - -
Aev09g2654 281 MobiDBLite consensus disorder prediction 83 108 - -
Aev09g2654 281 MobiDBLite consensus disorder prediction 135 281 - -
Aev09g2654 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Aev09g2654 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aev09g2654 281 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 240 - -
Aev09g2654 281 SUPERFAMILY Retrovirus zinc finger-like domains 106 138 IPR036875 GO:0003676|GO:0008270
Aev09g2654 281 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Aev09g2654 281 Gene3D - 1 115 IPR012677 -
Aev09g2654 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Aev09g2654 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aev09g2654 281 Gene3D - 116 142 - -
Aev09g2654 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2654 Aev-Chr9 27603234 27607785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2654 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 6.14e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2654 - - gmx:100776333 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2654 09 27603234 27607785 Aev09g2654 09 27603234 27607785 ECH