Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2564 ATGAGTTTGCCAAACCAGCTAAACGACGTGTCGTCGGGTTCGATTCCTCTGCTGGTGCTTGCGCAGATAGCCACCTGCCTCAGCTACCTCCGCTCCATGCTCTTTGCCTTCCTTCAATCCCTCGGCCTCTCAAGGTTCCCCACCGACCAGATCGTCGTCGATGACGGCCTCTTCGCCACCGTCGGATCAGGCCTCGCCGGTCTTATCATGCTCTCCGATCAGCTCGCAATCAACAAGCGCTTGTGCTACACATACGTCGCCACCGCCCTCGACCACGGCGCTGACGCCGACGGCTGCGTTGTCTGCCAGAACGCCTTCAAGGACGGGGACCAGGTCCGGAAGCTTCCTTGCCGCCACGTGTTCCACCGCCACTGCTTCGACGGCTGGCTCCAGTACAAGTTCAACTGCCCGAACTGCCCGCTCTGCCGCTCCTCCCTAATCTCCGACGAGCGCGTGGCCCACACGGAGCGCCGCGTTGGTCGCGAGCTTGCATCCTGGTTCTCTCTGCGATGA 513 0.6179 MSLPNQLNDVSSGSIPLLVLAQIATCLSYLRSMLFAFLQSLGLSRFPTDQIVVDDGLFATVGSGLAGLIMLSDQLAINKRLCYTYVATALDHGADADGCVVCQNAFKDGDQVRKLPCRHVFHRHCFDGWLQYKFNCPNCPLCRSSLISDERVAHTERRVGRELASWFSLR* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2564 170 Pfam Ring finger domain 99 143 IPR001841 -
Aev09g2564 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Aev09g2564 170 SMART ring_2 99 142 IPR001841 -
Aev09g2564 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 167 - -
Aev09g2564 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 167 - -
Aev09g2564 170 SUPERFAMILY RING/U-box 94 149 - -
Aev09g2564 170 ProSiteProfiles Zinc finger RING-type profile. 99 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2564 Aev-Chr9 27055447 27055959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2564 1 169 C3H Transcription Factor Family AT1G15100 44.706 2.24e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2564 K16282 - gmx:100803789 228.024