Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2478 ATGACGAGCGCTTCGGAGTTATTCTTCAGCAGGAGGCATCGATTGGGACGAAACAACGATCTCCATCTAGGGCTTGATCCCTCCCCTGTTCCTGACCTCAATCACCGCCATCGCCGCCACCACCACCACCATACCCGCCGTCTCTCTCACCATCCCTCTTCCACCGAGCGTGCAGCTGATAGATTGGCGTGGAGGTATAACCGGTCTCTCTTGAATGATGGCGAGGATGAGTCTGCAGGGAATGTGAGAGGTATAAGGGCAAGGGGTCCTACACCTACAGTGACTGCCAATGATAGGCTACCTATGGGCGTCTTACTCGCACGGGCAAGACTCGTTGAGAGGCTCAGAGGGCAGCCTGTCTCTACTATCAGGCAATATGATAGAGATTTAATGGGCCGGGATCAAGAAAGTGAATCATCAAATGATGTTGCAATTGAGGACTCTCTGGTTACGGACTTGACTTCCCAAATGGAAAGGTCCCACCTCTTGCAAGAGCTAAACAAAAAACCACCTGGACTCTCTCAGGATGCGCTCGACTGTTTGCATATGGAGGTTTTCAGCAGCAGGGATACAGGATATGAGCCCAGAGAACTGCAGGATTGTAGCATATGCTTGGACTCTTTCATGGATGGAGACGAGTTGATGTTTCTGCCATGTGGACATAAATTTCACTCTGCATGCTTGGATCCTTGGGTTCGCAGCTGTGGAGACTGTCCATATTGCCGAAGAGGCATAGTTGTAGATAGTAAGTTAAAAACAGAAAGAGGCTGA 771 0.5006 MTSASELFFSRRHRLGRNNDLHLGLDPSPVPDLNHRHRRHHHHHTRRLSHHPSSTERAADRLAWRYNRSLLNDGEDESAGNVRGIRARGPTPTVTANDRLPMGVLLARARLVERLRGQPVSTIRQYDRDLMGRDQESESSNDVAIEDSLVTDLTSQMERSHLLQELNKKPPGLSQDALDCLHMEVFSSRDTGYEPRELQDCSICLDSFMDGDELMFLPCGHKFHSACLDPWVRSCGDCPYCRRGIVVDSKLKTERG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2478 256 MobiDBLite consensus disorder prediction 73 97 - -
Aev09g2478 256 CDD RING-H2_PA-TM-RING 200 242 - -
Aev09g2478 256 MobiDBLite consensus disorder prediction 34 50 - -
Aev09g2478 256 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Aev09g2478 256 SMART ring_2 201 241 IPR001841 -
Aev09g2478 256 MobiDBLite consensus disorder prediction 18 56 - -
Aev09g2478 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 246 IPR013083 -
Aev09g2478 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 247 - -
Aev09g2478 256 PANTHER SI:CH211-59O9.10 1 247 - -
Aev09g2478 256 Pfam Ring finger domain 200 242 IPR001841 -
Aev09g2478 256 SUPERFAMILY RING/U-box 200 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2478 Aev-Chr9 26596708 26598189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2478 1 246 C3H Transcription Factor Family AT1G49850 37.868 1.77e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2478 - - gmx:100814695 277.715