Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2456 ATGGGGCTATGGCTATGGGAAGCTTTCGTCAATTGGTTACGCAGTTTCTTCTTCAAGCAAGAAATGGAGCTATCTCTGATAGGTCTTCAGAATGCCGGGAAAACTTCCCTAGTAAATGTTATTGCGACTGGTGGATTTAGTGAAGACATGATTCCTACGGTAGGATTCAATATGAAAAAGGTAACTAAAGGGAATGTGACAATAAAGTTGTGGGACCTTGGAGGTCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGTGCTGTTTCAGCTATTGTTTATGTAGTGGATGCAGCTGATTTTGACAATTTACCTGTCTCTAGAGGTGAACTTCATGACTTGTTGAGCAAGTCTTCTTTAAATGGTATTCCCCTGCTGGTTCTGGGTAATAAGATTGACCAACCAGGGGCCTTGTCTGAGCAAGACCTAATGGAACAGATGGGACTGAAATCAATCAATGAAAGAGAAGTTTGTTGCTTCATGATCTCATGTAAAAACTCCACCAACATTGACACAGTTGTTGATTGGCTTAAAAAGAGCTCTAAGCATTCTGTTTTGGCTGAGAATGCATGGCAGGACCACTGGATGAAGCTACCATTTGATGAAGTTAATCTGTTTTTTCAGGGAAGTGCAAGGCTGTCCCTTGATGCTGAAGGACTTCCTCTCAATGCTATTCACATATCACATTATTCATCTCAAGGCATTCACATGCAGCTGCTGATGCTTATTTTTTTATTAATCAAACCAGTTAACAAGGCAACTTGCCAGCTTCAAGATCTTCAAAAATGCAGAAAGTTTATGCCTATTGGTAGCACAATCACAACTGCAAGAATTCTTCTCTTGGCTGAGAATGCCGGACAGGAAGAAGACATGGCCAGTTTTGGAGGAACCACACAAAAATGCATGGCATGTGACAAAACAGTGTACCTTGTTGATAAGCTTTCCGCCGATGGCCGTACCTATCATAAGGCCTGCTTTCGTTGCCACCATTGCCGGAATACCCTCAAGCTGAGCAACTACTGTTCTTTTGATGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCTTTGACAAAAGCTTCGAAGGAACACCCAAAATTCAGAAACCAGAAAAACCGGTCTCTGAAAATGAGAGTGGTAAATCATTGTCAAACGTGTTTGTGGGCACCACAGACAAATGTGTGTGTTGCAAAAAGACAGTCTATCCCATTGAGAGGGTTACGGTTAATGCGAATCCCTACCATAAGAGCTGCTTCAAATGTACACATGGAGGTTGTACTATAAGCTCATCAAACTTTGTTACACATGAGGGGAAACTATACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAGGGCAATTACAGCCAGCTCGAGAATGACATCAGTACCATTACTATTTGA 1428 0.4223 MGLWLWEAFVNWLRSFFFKQEMELSLIGLQNAGKTSLVNVIATGGFSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADFDNLPVSRGELHDLLSKSSLNGIPLLVLGNKIDQPGALSEQDLMEQMGLKSINEREVCCFMISCKNSTNIDTVVDWLKKSSKHSVLAENAWQDHWMKLPFDEVNLFFQGSARLSLDAEGLPLNAIHISHYSSQGIHMQLLMLIFLLIKPVNKATCQLQDLQKCRKFMPIGSTITTARILLLAENAGQEEDMASFGGTTQKCMACDKTVYLVDKLSADGRTYHKACFRCHHCRNTLKLSNYCSFDGVLYCRPHYDQLFKRTGSFDKSFEGTPKIQKPEKPVSENESGKSLSNVFVGTTDKCVCCKKTVYPIERVTVNANPYHKSCFKCTHGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDISTITI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2456 475 ProSiteProfiles small GTPase Rab1 family profile. 17 229 - -
Aev09g2456 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 427 466 - -
Aev09g2456 475 ProSiteProfiles small GTPase SAR1 family profile. 1 236 - -
Aev09g2456 475 CDD LIM2_SF3 401 461 - -
Aev09g2456 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 180 IPR027417 -
Aev09g2456 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 295 327 - -
Aev09g2456 475 CDD Arl10_like 23 180 IPR044154 GO:0003924|GO:0005525|GO:0015031
Aev09g2456 475 ProSiteProfiles LIM domain profile. 399 459 IPR001781 -
Aev09g2456 475 SMART rab_sub_5 22 181 - -
Aev09g2456 475 TIGRFAM small_GTP: small GTP-binding protein domain 20 179 IPR005225 GO:0005525
Aev09g2456 475 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 5 184 - -
Aev09g2456 475 Gene3D - 3 182 IPR027417 -
Aev09g2456 475 Pfam ADP-ribosylation factor family 13 180 IPR006689 GO:0003924|GO:0005525
Aev09g2456 475 Pfam LIM domain 401 456 IPR001781 -
Aev09g2456 475 Pfam LIM domain 302 356 IPR001781 -
Aev09g2456 475 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 5 184 - -
Aev09g2456 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 328 368 - -
Aev09g2456 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 393 426 - -
Aev09g2456 475 SMART sar_sub_1 6 182 IPR006689 GO:0003924|GO:0005525
Aev09g2456 475 ProSitePatterns LIM zinc-binding domain signature. 302 336 IPR001781 -
Aev09g2456 475 ProSiteProfiles small GTPase Arf family profile. 15 182 - -
Aev09g2456 475 PRINTS GTP-binding SAR1 protein signature 79 104 IPR006689 GO:0003924|GO:0005525
Aev09g2456 475 PRINTS GTP-binding SAR1 protein signature 23 46 IPR006689 GO:0003924|GO:0005525
Aev09g2456 475 PRINTS GTP-binding SAR1 protein signature 124 145 IPR006689 GO:0003924|GO:0005525
Aev09g2456 475 CDD LIM1_SF3 298 360 - -
Aev09g2456 475 Gene3D Cysteine Rich Protein 395 465 - -
Aev09g2456 475 Gene3D Cysteine Rich Protein 297 366 - -
Aev09g2456 475 SMART arf_sub_2 5 186 - -
Aev09g2456 475 ProSiteProfiles LIM domain profile. 300 360 IPR001781 -
Aev09g2456 475 SMART lim_4 301 353 IPR001781 -
Aev09g2456 475 SMART lim_4 400 452 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2456 Aev-Chr9 26461508 26474010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2456 26 148 Miscellaneous Gene Families AT5G05670 30.882 1.01e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev09g2456 Arf 1.3e-44 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2456 K07955 K09377 gmx:100306027 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2456 09 26461508 26474010 Aev09g2456 09 26461508 26474010 ECH