Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2438 ATGTCCTCTCCCAACGCCGCTGCCTCTGGCTCCGCCTCGCGGAAGAGCAAGGGAAGGCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACCTGCAGGTGACCTTCTCCAAGCGCCGCAGCGGCCTCTTCAAGAAGGCCAGCGAGCTCTGCACCCTCTGCGGTGCTGAGGTGGCAATCATCGTCTTCTCGCCAGGCGAGAAGGTCTTCTCCTTTGGCCACCCCAACGTCGACGCCGTGCTCGACCGCTACCTCACGCGGGCCCCGCAGCACAGCTCCGGCACCCTCCAGTTCATCGAGGCCCACCGCAGCGCCAACGTCCGCGACCTCAACGCCCAGCTCACTCAGATCAACAACCACCTCGACGTCGAGAGGAAGCGCTGCGACGAGCTCACCCGCATCCGCAGGACCACCATGACTCAGTTCTGGTGGGCCTCCGCCGTCGAGGGCATGACTCAGCAGCACCTCGAGCAGCTCCGGGCTGGCCTTGAGGAGCTCAAGAAGAGCGTCACCCGCCATGCTGACAGGCTCATCATCCAGGGCGCCGTTGCTGCTAACGCTAACCCTATCCACCAGTTCATGGGCGCGTCCTCCTCAAACGCCGTCGTGGCTCCTCCAGCTCCAGCTCCTGCTCCTGCTCCGCTCTTTGCTCCTCCGCCGCAGATGATCCCCCCTCCTGCTATGTATCATGGAGGATTCAACCTCAACGGCGGCAATAACAACAACAACAACAACATGGGAGGCTTTGGATTCTTCTGA 762 0.6168 MSSPNAAASGSASRKSKGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGEKVFSFGHPNVDAVLDRYLTRAPQHSSGTLQFIEAHRSANVRDLNAQLTQINNHLDVERKRCDELTRIRRTTMTQFWWASAVEGMTQQHLEQLRAGLEELKKSVTRHADRLIIQGAVAANANPIHQFMGASSSNAVVAPPAPAPAPAPLFAPPPQMIPPPAMYHGGFNLNGGNNNNNNNMGGFGFF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2438 253 PANTHER MADS BOX PROTEIN 16 190 - -
Aev09g2438 253 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Aev09g2438 253 MobiDBLite consensus disorder prediction 1 15 - -
Aev09g2438 253 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Aev09g2438 253 SUPERFAMILY SRF-like 18 91 IPR036879 GO:0003677|GO:0046983
Aev09g2438 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 16 190 - -
Aev09g2438 253 Coils Coil 108 128 - -
Aev09g2438 253 Gene3D - 96 189 - -
Aev09g2438 253 Coils Coil 157 177 - -
Aev09g2438 253 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Aev09g2438 253 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2438 Aev-Chr9 26364425 26365186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2438 14 202 Type I MADS-box Gene Family AT5G60440 55.729 1.71e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev09g2438 SRF-TF 9.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2438 - - pper:18768967 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2438 09 26364425 26365186 Aev09g2438 09 26364425 26365186 ECH