Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2437 ATGTCGAAGAAAAAGTCCAGCTTAGGTCGCCAAAAAATCCCAATTGAGAAAATACCGAAAAAGAGTCATTTGCAAGTGACGTTTTCTAAGCGTCGGTCAGGGCTATTCAAGAAAGCTAGTGAGCTCTGCACCCTCTGTGGCGTAGAGATTGCGATTGTGGTTTTCTCTCCTGCTGATAAGGCATTCTCTTTCGGCCATCCGGAAGTTGAATCGATCATCGACCGTTACATAAGCCGAAACCCGCCGCAGGAATCAAGCACGCGGCATCTTGTGGAGGCTCATCGCAACGCCAACGTTCGCGATCTCAATATGCAACTGACTCAGCTTGTCAATCATTTGGAGATTGAGAAGAAGAGAGGGGAGGAGCTTGGTCATGTGAGGAAGGCTAGGCAGAGGCAGTTTTGGTGGGAAAGCCCTATTGATGAGCTTGGATTGCATCAACTGCTCCAATTAAAGGCTTCAATTGAGGAGCTTCAGAAGAATTTGGGAAAACTTGCTAGCAATATCATGATTGGGGCTAATAATAATAATCATGGAAATGTTGGGCCTTTTGATGCAATTTTTGAAAATAAAGCTGCTGGGATTAATAATATTGGCGGCTCCAACTCCAACATTGCAAATCCCTATTATCTTGGTTTTCGTCATGGCTATCTTTGA 657 0.446 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYISRNPPQESSTRHLVEAHRNANVRDLNMQLTQLVNHLEIEKKRGEELGHVRKARQRQFWWESPIDELGLHQLLQLKASIEELQKNLGKLASNIMIGANNNNHGNVGPFDAIFENKAAGINNIGGSNSNIANPYYLGFRHGYL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2437 218 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Aev09g2437 218 PANTHER MADS BOX PROTEIN 7 177 - -
Aev09g2437 218 Coils Coil 148 168 - -
Aev09g2437 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Aev09g2437 218 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Aev09g2437 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Aev09g2437 218 Gene3D - 89 182 - -
Aev09g2437 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Aev09g2437 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Aev09g2437 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Aev09g2437 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Aev09g2437 218 SUPERFAMILY SRF-like 9 86 IPR036879 GO:0003677|GO:0046983
Aev09g2437 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2437 Aev-Chr9 26359281 26359937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2437 5 177 Type I MADS-box Gene Family AT5G60440 52.174 1.30e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev09g2437 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2437 - - gmx:100781526 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2437 09 26359281 26359937 Aev09g2437 09 26359281 26359937 ECH