Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2436 ATGTTCAAGCCAAGTAGAAAAATCACTGGGCGGAAGAAGATCGAGATCAAGAAGCTAGACAAGGAAGCGAACAAGCAAGTAACATTTTCCAAACGAAGATCGGGATTGTTCAAAAAAGCCAGTGAATTATGCATCTTATGCAATGCTCACGCGGCTATTATAGTGTTCTCTCCCGCTGACAAATTGTTTTGCTTCGGAGAGCCCAACACCGAAGCCGTCGTCAAGCGCTTTCTTATGATAGGCGCTGCGACGACAGATGATCTGTCTAAACCAATGACGACGTCGACAACAGAGTCTGACAAGTTGTCATCGTCATCATTGTCGTGTGAGGAGCACAACAGGAAATATGAGGAGAAGATAAAGATCTTGGAGATGGAAAAGAAGAGATTGAAAGAGATGGAGAGTTTTGCTAAGGTTTGTAGGAGAGGGGAATGGTGGAACGAGCAGATTGATGAGATGATGAGTGTTGAACAGGTGGAGCAGTTTGTGGTCGCCATTTATGAGCTCAGGAGGAGACTTGCTGAAAGGGCTGGTGAATTGATGATAATACATTCCATTTTATAA 564 0.4397 MFKPSRKITGRKKIEIKKLDKEANKQVTFSKRRSGLFKKASELCILCNAHAAIIVFSPADKLFCFGEPNTEAVVKRFLMIGAATTDDLSKPMTTSTTESDKLSSSSLSCEEHNRKYEEKIKILEMEKKRLKEMESFAKVCRRGEWWNEQIDEMMSVEQVEQFVVAIYELRRRLAERAGELMIIHSIL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2436 187 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 183 - -
Aev09g2436 187 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Aev09g2436 187 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Aev09g2436 187 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Aev09g2436 187 PANTHER MADS BOX PROTEIN 7 183 - -
Aev09g2436 187 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2436 Aev-Chr9 26356665 26357228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2436 6 171 Type I MADS-box Gene Family AT5G60440 38.323 7.06e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev09g2436 SRF-TF 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2436 - - cam:101502875 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2436 09 26356665 26357228 Aev09g2436 09 26356665 26357228 ECH
Aev05g1243 05 8739997 8742647 Aev09g2436 09 26356665 26357228 PCT