Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2412 ATGGCACAACCACCACCACATGGTTCATCCTTTGTTTTTCACGGCTTTGATGACTTAAACGACTCTGCTCTGTTTGACAACGATCATGGTGACCTTGTCCCTGTCGTCTCTGATGACAAGTATGCGGAGGAATTGCAGTTCCAGGAGACCCTCATGTACTCTTTGACCACTTCCCAAAACTCCATCAAAGGGTCATCATCAGAGGGCGAATCTTCCTTCTCTTCCGATGTGATCATATGCGAGATTTGTGCAGAAACCAAAATGAGCTATCAGATGTTCAGGATAAAGGGATGCGGCCATTCCTTCTGCACTGAATGTGTCGCCAAGCAGGTGGCAACGAAGATCCAAGAGAGCATAGCGGTGGTTGCGTGCCCTGCTTTGAACTGCCAGGGTGTGTTGGAGCTTGATGCTTGCAGAACAATCCTTCCAGAAGAGATCATTGGTAGGTGGGATAAGGCACTCTGTGAGGCACTTTTTCAAACAGCTCAAAAGTTCTATTGCCCCTTCAGGAATTGCTCTGCATCGCTGCTTGATGAGAATGAAGGGGGAAACAAAATTATTAGGGAAGCTGAGTGTCCCTTATGTCACAGGCTGTTCTGTGCAAGGTGCCATGTTCCATGGCACCCAGGGGTTGAGTGCGAGGTGTTTCAGACACTGAATGAGGATGAGAGAGGGAGGGAGGATCTCCTTGTCAGGGAGCTTGCTAGTGAGGAGAACTGGGGAAGGTGTCCACAATGCAAGTTCTATGTGGAAAAGACTGAAGGCTGTTTGCATATCATATGCAGGTGCCGATTTGAGTTCTGCTATGCTTGCGGGGGACAGTGGACAAATGATCATGGTGGCTGCCAATGA 852 0.4871 MAQPPPHGSSFVFHGFDDLNDSALFDNDHGDLVPVVSDDKYAEELQFQETLMYSLTTSQNSIKGSSSEGESSFSSDVIICEICAETKMSYQMFRIKGCGHSFCTECVAKQVATKIQESIAVVACPALNCQGVLELDACRTILPEEIIGRWDKALCEALFQTAQKFYCPFRNCSASLLDENEGGNKIIREAECPLCHRLFCARCHVPWHPGVECEVFQTLNEDERGREDLLVRELASEENWGRCPQCKFYVEKTEGCLHIICRCRFEFCYACGGQWTNDHGGCQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2412 283 SUPERFAMILY RING/U-box 153 217 - -
Aev09g2412 283 SMART ring_2 80 127 IPR001841 -
Aev09g2412 283 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Aev09g2412 283 Pfam IBR domain, a half RING-finger domain 232 282 IPR002867 -
Aev09g2412 283 Pfam IBR domain, a half RING-finger domain 152 213 IPR002867 -
Aev09g2412 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 161 IPR013083 -
Aev09g2412 283 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Aev09g2412 283 Gene3D - 211 283 - -
Aev09g2412 283 SUPERFAMILY RING/U-box 224 282 - -
Aev09g2412 283 SUPERFAMILY RING/U-box 75 159 - -
Aev09g2412 283 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 273 IPR031127 GO:0004842|GO:0016567
Aev09g2412 283 SMART ibrneu5 148 213 IPR002867 -
Aev09g2412 283 SMART ibrneu5 223 282 IPR002867 -
Aev09g2412 283 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 273 - -
Aev09g2412 283 ProSiteProfiles TRIAD supradomain profile. 76 283 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2412 Aev-Chr9 26204254 26205201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2412 68 273 C3H Transcription Factor Family AT2G19610 28.169 9.89e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2412 K11975 - ini:109165261 345.125