Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2411 ATGGCAGCACAGTCCCTACAACAAGCAGCAGCCTCTACCTTAGCTCTTAACGGCGTTGACGACTTCTACTTCTCTGCCCTGTTCGACGACGATCAAGCTCACCCTCACCCCATTTCCGATGACAAGTATGCTCACGAGTTACAGTTCCAAGAGACCCTCATGTCCTCTCTCATCGCTTCCCAAAACAAAGGATCATCATCGTTACCATCACCATCCATCCTCTGCTTGCCATCAACATCAACGCCTTCTTCATCAAACGCCGTTGAGGTTACCCTAATCCCCATCACCAACCACATTGATTTCATGGGTGTTGATTATGATGATAACGAAGAAGAAGAAAAAGTGGATTTGCCACTCAACCATGTCATATGTGAGATTTGTGCAGAAACCAAAATGAGTGACCAGATGTTCAGGAACAATAGATGTGACCATTCATTCTGCTCTGACTGTGTCACCAAACAGGTAGCAACAAAAATCCAAGAGAACATCACAGTGGTTGCGTGCCCTGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGACGCTTGCAGGCCCATGCTTCCAAAAGAGCTTCTTGATAGGTGGGATGAGGCACTCTGTGAGGCCCTTTTTCTTGCAGCCCCAAAATTCTATTGCCCCTTTAGGGATTGCTCTGCAATGCTGCTTGATGAGGATGAAGGGGGGAACAACATTAGGGAGGCTGAGTGCCCCTTTTGCCACAGGCTGTTCTGTGCAAGGTGCTATGTTCCATGGCACCCAGGGGTTGAGTGTGAGGTGTTTCAGACACTGAATGAGGATGAGAGAGGAAGAGAGGATCTTCTTGTCAGGGAGCTTGCTAGTGAGAAGAATTGGAGAAGGTGTCCACAGTGCAAGTTCTATGTGGAAAGGACTCAAGGCTGTTTGCATATTGTCTGCAGGTGCAAATTTGAATTTTGCTATGCGTGTGGAGATCAGTGGACTGCTACTCATGGTGGGTGCCAGAGGAATTAG 987 0.4792 MAAQSLQQAAASTLALNGVDDFYFSALFDDDQAHPHPISDDKYAHELQFQETLMSSLIASQNKGSSSLPSPSILCLPSTSTPSSSNAVEVTLIPITNHIDFMGVDYDDNEEEEKVDLPLNHVICEICAETKMSDQMFRNNRCDHSFCSDCVTKQVATKIQENITVVACPGLNCKGVLELDACRPMLPKELLDRWDEALCEALFLAAPKFYCPFRDCSAMLLDEDEGGNNIREAECPFCHRLFCARCYVPWHPGVECEVFQTLNEDERGREDLLVRELASEKNWRRCPQCKFYVERTQGCLHIVCRCKFEFCYACGDQWTATHGGCQRN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2411 328 ProSiteProfiles TRIAD supradomain profile. 120 328 IPR044066 -
Aev09g2411 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 202 IPR013083 -
Aev09g2411 328 Pfam IBR domain, a half RING-finger domain 208 256 IPR002867 -
Aev09g2411 328 Pfam IBR domain, a half RING-finger domain 275 325 IPR002867 -
Aev09g2411 328 SUPERFAMILY RING/U-box 196 260 - -
Aev09g2411 328 SUPERFAMILY RING/U-box 121 201 - -
Aev09g2411 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 36 316 IPR031127 GO:0004842|GO:0016567
Aev09g2411 328 SMART ibrneu5 192 256 IPR002867 -
Aev09g2411 328 SMART ibrneu5 266 325 IPR002867 -
Aev09g2411 328 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 36 316 - -
Aev09g2411 328 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Aev09g2411 328 Gene3D - 254 328 - -
Aev09g2411 328 ProSiteProfiles Zinc finger RING-type profile. 124 169 IPR001841 -
Aev09g2411 328 SUPERFAMILY RING/U-box 267 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2411 Aev-Chr9 26201542 26202636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2411 124 315 C3H Transcription Factor Family AT2G19610 27.000 1.98e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2411 K11975 - qsu:112001859 377.096