Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2400 ATGGTTATGGCTTCCCTGAAGGACCAGCCAGCACCTTCTTCAATCGACGACACCAAGACACTCATCTGTGCTCTCAACTTTCTCTCCCGCGATGTCCCTCTTCCACCTCACCTCCTTCGCTCTGTTTCTTCAATCTATAACTCCAACCCCTCTCCTCAAGATCAGCTCAATGAAGATGTAGGGAATTCTAGAGAAGATTTAATTACAGACCTTCAAGGTGCACTACTTGAGCAACGCCCAAATGACTTGTCAGGTTCCAAATTGGAGAAAGCAAGGGAAAACCGTTATCAAAATCTGATTCAGCATCGGTTAAATGAACTCGAAGGATTGCCTTCAACCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGTCTGAAGCTAGCAGAGTTGCAATCGAAGGTTCGATCTGATGTGAGTTCTGAATACTGGCTGAATATTAAATGTGCATATCCCGACAGGCAATTGTTTGATTGGGGCATGATGAGATTGCACCGTCCACTTTATGGCGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGATGCTGAGAGACTATCAAGGTTAGAGGAGGAGGAGAAGAATCATGTAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACTGTCCGTGAGTTTCAGTTACAAGTTCAAGCTTCTCTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCTTGGCATGGAAGACAAAGACAACGGGCATCACGGGCAGAGAAACTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAAAGCAAGAATGAAAGATTGACTACGCTTCTCGAAGAAACCAATAAGCTACTTGTTAATTTGGGAGCTGCAGTTCAACGTCAAAGGGACTCTAAACATTCAGATGGTATTGAACCCTTGGAAGATTCAGAAGTTGATCTACCTGAGTCAGATGCTTCAAAGAATGACAAGGAATCACCTCTTGAGGAAGATATGGATGGGATAGATTCTGATAATAATGGTGATACTAGTGATTTACTTGAAGGTCAGAGGCAGTACAACTCTGCCATACATTCAATTCAAGAAAAGGTATCTGAGCAACCATCTATTCTTGAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGTTAATAGCATATCTTCTGGAATACAAGGGTGTGAGTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTTTGCCGAATTGGATGAATGAATTCTCGACATGGGTTCCAAGTATTACAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTTAGGGGATAAGAAATTTAATGTTCTGTTGACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGAACTACTTGATCGTGGATGAAGGACATCGGTTGAAGAATCATGAGTCTGCTCTGGCAAGAACCCTCGATAATGGCTATCACATCCAACGCAGACTACTGTTGACTGGTACCCCAATTCAGAACAGCTTGCAGGAATTGTGGTCGCTGCTCAATTTTCTCCTTCCAAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCTTTTGCAGACCGGGTCGATGTCTCTCTAACAGATGAAGAACAGCTTTTGATCATTCGGCGTCTACATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAGAAATATCTTCCCGGGAAATCTCAAGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTAGGCAGAGTTGGCCTAGACAATGGTTCTGGAAAATCAAAGAGTCTGCAGAATTTAACAATGCAACTCAGGAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAGTCGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAATTGCTTGACCGTCTGCTCCCAAAACTTCGAAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACATTCTCGAAATTTATTTGCGGCTACATGATTATAAGTATATGAGACTTGATGGCTCCACAAAAACTGAGGAAAGAGGCACCCTTCTACGAAAATTTAATGCTCCTGACTCTCCGTACTTCATGTTTCTATTGAGCACCCGTGCTGGAGGTCTGGGTTTGAACTTACAAACAGCAGATACTGTCATAATCTTTGACAGTGATTGGAACCCCCAAATGGATCAACAAGCCGAGGATCGAGCCCATCGTATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCGAAACAAAAGATGGGCATTGATGCAAAAGTCATCCAGGCAGGACTTTTCAACACAACATCAACAGCCCAGGACAGGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTACAAGCTCGCTGGGGACAGATGTACCTAGTGAGAGAGAAATTAATCGCCTTGCAGCCCGATCGGATGAGGAGTTTTGGTTATTTGAAAAAATGGATGAAGAGAGAAGGCAAAAGGAAAATTACAGATCTCGTCTAATGGAAGAGCATGAATTACCAGATTGGGTTTACTCACCACTTAATAAAGAAGATAAGTTCAAAGATTTTAACAGTGGTAGCACTACCGGAAAGCGAAAAAGGAAAGAAGTTACATATGCAGATACTTTAAGTGATCTTCAATGGATGAAGGCTGTGGAGAATGGGGTGGACATATCGAAGCTTTCGGGTAGAGGGAGAAGAAGAGACCACCTCTCATATGACAATGCGACACAAGCCAGCGATAATTCGGCGGCAGAAGAAAGGTTATCAGAACTGCAGAATGAAAGTATCCCCATGGTGAATGAGAGAACAGATGAAGATAGTTTCCAGGTGACCCCTGCATCAAAGAGATTCAAGCATGAAGGGACAAATTCCCATAGACATGCAAACGAGAATGTGAGAGGAAGTGGTTTGAACCAACCTGTGTTATCCTGGAACACTTACAGAAAGAAGAGGTCAAGCTATCATGGCCAGGGTTCATCATCCTCTGATACCAAAGGGCAGAATTCAAATGGAAAAGCAAACTGGAACTAA 3279 0.4224 MVMASLKDQPAPSSIDDTKTLICALNFLSRDVPLPPHLLRSVSSIYNSNPSPQDQLNEDVGNSREDLITDLQGALLEQRPNDLSGSKLEKARENRYQNLIQHRLNELEGLPSTRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNIKCAYPDRQLFDWGMMRLHRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEEEKNHVETRKRKFFAEILNTVREFQLQVQASLKRRKQRNDGIQAWHGRQRQRASRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQRDSKHSDGIEPLEDSEVDLPESDASKNDKESPLEEDMDGIDSDNNGDTSDLLEGQRQYNSAIHSIQEKVSEQPSILEGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVSGPHLIVAPKAVLPNWMNEFSTWVPSITTILYDGRLDERKAMKEELLGDKKFNVLLTHYDLIMRDKAFLKKIHWNYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYSRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKYMRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKEDKFKDFNSGSTTGKRKRKEVTYADTLSDLQWMKAVENGVDISKLSGRGRRRDHLSYDNATQASDNSAAEERLSELQNESIPMVNERTDEDSFQVTPASKRFKHEGTNSHRHANENVRGSGLNQPVLSWNTYRKKRSSYHGQGSSSSDTKGQNSNGKANWN* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2400 1092 Coils Coil 990 1010 - -
Aev09g2400 1092 CDD SF2_C_SNF 688 821 - -
Aev09g2400 1092 SMART ultradead3 382 575 IPR014001 -
Aev09g2400 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 611 IPR027417 -
Aev09g2400 1092 Gene3D - 355 610 IPR038718 -
Aev09g2400 1092 Pfam SNF2-related domain 389 677 IPR000330 GO:0005524|GO:0140658
Aev09g2400 1092 SMART SnAC_2 903 964 IPR029295 GO:0042393
Aev09g2400 1092 Pfam Snf2-ATP coupling, chromatin remodelling complex 904 964 IPR029295 GO:0042393
Aev09g2400 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 398 564 IPR014001 -
Aev09g2400 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1040 - -
Aev09g2400 1092 MobiDBLite consensus disorder prediction 324 338 - -
Aev09g2400 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 864 IPR027417 -
Aev09g2400 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 700 867 IPR001650 -
Aev09g2400 1092 MobiDBLite consensus disorder prediction 305 356 - -
Aev09g2400 1092 PANTHER ATP-DEPENDENT HELICASE BRM 12 1040 - -
Aev09g2400 1092 MobiDBLite consensus disorder prediction 1032 1092 - -
Aev09g2400 1092 SMART helicmild6 726 810 IPR001650 -
Aev09g2400 1092 Coils Coil 901 921 - -
Aev09g2400 1092 Pfam Helicase conserved C-terminal domain 697 810 IPR001650 -
Aev09g2400 1092 Gene3D - 617 917 IPR027417 -
Aev09g2400 1092 MobiDBLite consensus disorder prediction 237 256 - -
Aev09g2400 1092 MobiDBLite consensus disorder prediction 1044 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2400 Aev-Chr9 26109426 26117083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2400 693 838 RAD5 or RAD16-like Gene Family AT5G43530 36.000 1.26e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev09g2400 SNF2_N 4.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2400 - - gmx:100786280 1855.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2400 09 26109426 26117083 Aev09g2400 09 26109426 26117083 ECH