Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2300 ATGAAGCAAGTTCTTCTTCTTGTTCTTGTTCTGCTCTTCTTGGCCTCTGAAGTAACCATCTCAGTCCCTGAGTCTGAGTTTTCTTCTTCTATTCTAAAGCCTCACTCTGCCGACTCATTCAATGTCAGCTATATCCAGATGAAGAACCAGGGGGCTTGTTCTTATGTGGTGATTATATCTACTAGCTGTTCTTCACCTACCTATACAAGGGATCAGATCAGTATCGCTTTTGGGGATGCTTATGGAAACCAGGTATATGCACCAAGACTTGATGATCCAGGTTCAGGGACATTTGAGCGGTGTTCCTCAGATACATTTCAGATAAATGGTCCATGTGCATATCAGATATGTTATGTGTACCTATATAGATCTGGATCAGATGGTTGGAAACCTGAGAGTGTGAAAATCAATGGTTACAATGGCAGGCCTGTTACTTTCTATTATGACACATTCATCCCCAGAGATACTTGGTTCGGCTTTAATCTCTGCAACGATGCTTCTTCTTCATACCATGTTTCTACACACAAATGGAGACAATTTCTCTCTCGTATTCTCTCTCCTCATCAGCTCGTTTTCTCTCTCTACCCCCGCGCCGCCATGCCTTCTCTCACCTTCTCAGACTCAGATGCCACCCCAAAAGACAAGAAGAAGGACAAGAAGAAGAACAAGAAGAAGAACAAGAAGAAGAACAACAAGGACCAATCCCCTGTCATTGAACAACCCCATGATTCCATTTGCACGAAGAGCAAGAAAAGTTCCGAACTTGGCACTGATCTGAATCCCCAAGAACATGGGGTTTCGCGGAACAAGAAGAAGCGCAAGGCCTCATCAGATTCCGACATGATGGGGACCCCACGTGGGGATGAGGAGGAGGAGGCCAAGAGTGAGACCAGCTCCGAGGTGGTTGAGGCAAAACAAGAAAAGAAGAACATGAAGAAGAAAACGAAGAAGGCTAAGTTGGAGGATGAACCTTTCTCGATAGAAGAGGAAGAGGATCATGAGAAGAAGAAGGGGGAGAAGAAAAAGGAGGAGGATCCCAATGCGGTTTCAAGGTTCAGGATATCTGAGCCATTGAGGGAGAAGCTGAAAGAGAAGGGAATTGAAACGCTGTTTCCCATTCAAGCAATGACTTTCGATACCATTCTTGATGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACGCTGGCCTTTGTGTTGCCCATATTAGAGTCCTTAACAAATGGTCCGGCAAAAGCATCAAGAAAGACCGGCTATGGGAGGCCTCCAAGCGTTCTTGTGCTTTTACCAACTAGGGAATTGGCCTGTCAGGTGCACGCTGATTTTGAAGTTTATGGTCGGGCCATGGGATTAATATCTTGTTGTTTATACGGTGGAGCTCCATATCAAGGCCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAGCTAAAGTTTCGTGTCCTTGATGAAGCAGATGAGATGTTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTAGGTAAGGTAGAAAATGTTCGTAAAGTCCAGACATTTCTCTTCAGTGCTACTTTGCCTGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACCAAAATGAAGGCCAGTATGAATGTCCGGCATATTGTTCTACCCTGCACTGGTTCTGCCAGGTCACAGCTTATCCCAGACATAATTCGCTTTTATAGCAGTGGAGGTAGGACAATTATATTTACTGAGACAAAGGAGTCCGCCTCACAACTCGCTGGTCTCTTGCCTGGAGCAAGAGCTCTCCATGGCGACATACAGCAGGCACAACGTGAGGTTACATTGTCCGGCTTCAGGTCTGGGAAATTCATGACGTTAGTTGCCACCAATGTGGCAGCCCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATTCATCGATCTGGACGTACAGGAAGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGAAAGTCAAATATATCTAAAATAGAAAGAGAATCGGGTGTAAAATTTGAACACATATCTGCTCCACAGCCTGATGATATTGCCAAAGCTATTGGTGGGGAAGCTGCTGAAATGATTATCCAAGTATCTGATAGTGTGATTCCTGCATTCAAACCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTATCCGTCGTTGAATTACTTGCGAAGGCACTTGCCAAGGCTGTTGGTTATACGGATGTGAAGAGAAGATCACTTCTCACTAGCATGCAGAACTATGTGACATTGCTTCTTGAGATTGGGAAACCTATCTTCACCCCATCTTTTGCATACGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTCGAGGCAGTGAAAGGTCTTACACTCACTGCAGATGGAAATGGTGTTGTTTTTGATGTACCGGCTGAAGATTTAGATACATATCTTGAAGGTCAGCAAAACGCCTCAAATGTAAGTTTAGAGGTGTTAAAAGCATTGCCGCGTTTGCAAGAAAGAGATCAATCGCGAGGGGGCAGATTTGGTGGTGGTCGAGGAGGTTTTGGTGATAGAAGTGGTGGGAGCAGATTTTCAGGTGGAAGAGGTGGTGGCAGGAATAGTAAATTTTCAAATGATAGATTCTCGAATGGAGGTGGTGGTGGTGGGAGAGGCCATGGTGGCAACCGGGGTGGAAGGAGATGGTGA 2820 0.4489 MKQVLLLVLVLLFLASEVTISVPESEFSSSILKPHSADSFNVSYIQMKNQGACSYVVIISTSCSSPTYTRDQISIAFGDAYGNQVYAPRLDDPGSGTFERCSSDTFQINGPCAYQICYVYLYRSGSDGWKPESVKINGYNGRPVTFYYDTFIPRDTWFGFNLCNDASSSYHVSTHKWRQFLSRILSPHQLVFSLYPRAAMPSLTFSDSDATPKDKKKDKKKNKKKNKKKNNKDQSPVIEQPHDSICTKSKKSSELGTDLNPQEHGVSRNKKKRKASSDSDMMGTPRGDEEEEAKSETSSEVVEAKQEKKNMKKKTKKAKLEDEPFSIEEEEDHEKKKGEKKKEEDPNAVSRFRISEPLREKLKEKGIETLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRPPSVLVLLPTRELACQVHADFEVYGRAMGLISCCLYGGAPYQGQEIKLRRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVRKVQTFLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASMNVRHIVLPCTGSARSQLIPDIIRFYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRKSNISKIERESGVKFEHISAPQPDDIAKAIGGEAAEMIIQVSDSVIPAFKPAAEELLNNSGLSVVELLAKALAKAVGYTDVKRRSLLTSMQNYVTLLLEIGKPIFTPSFAYGVLRRFLPEEKVEAVKGLTLTADGNGVVFDVPAEDLDTYLEGQQNASNVSLEVLKALPRLQERDQSRGGRFGGGRGGFGDRSGGSRFSGGRGGGRNSKFSNDRFSNGGGGGGRGHGGNRGGRRW* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2300 939 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 260 910 - -
Aev09g2300 939 CDD SF2_C_DEAD 575 701 - -
Aev09g2300 939 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 260 910 - -
Aev09g2300 939 CDD PLAT 53 164 - -
Aev09g2300 939 MobiDBLite consensus disorder prediction 272 309 - -
Aev09g2300 939 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 504 512 IPR000629 -
Aev09g2300 939 Gene3D - 575 796 IPR027417 -
Aev09g2300 939 SMART ultradead3 366 572 IPR014001 -
Aev09g2300 939 MobiDBLite consensus disorder prediction 316 352 - -
Aev09g2300 939 Pfam Helicase conserved C-terminal domain 593 692 IPR001650 -
Aev09g2300 939 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 378 560 IPR014001 -
Aev09g2300 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 705 IPR027417 -
Aev09g2300 939 CDD GUCT_RH7_like 788 873 - -
Aev09g2300 939 Pfam GUCT (NUC152) domain 781 876 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aev09g2300 939 Pfam Embryo-specific protein 3, (ATS3) 45 163 IPR010417 -
Aev09g2300 939 CDD DEADc 358 555 - -
Aev09g2300 939 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 50 160 IPR036392 GO:0005515
Aev09g2300 939 MobiDBLite consensus disorder prediction 877 939 - -
Aev09g2300 939 MobiDBLite consensus disorder prediction 203 352 - -
Aev09g2300 939 SUPERFAMILY RNA-binding domain, RBD 786 868 IPR035979 GO:0003676
Aev09g2300 939 SMART helicmild6 615 692 IPR001650 -
Aev09g2300 939 Pfam DEAD/DEAH box helicase 371 548 IPR011545 GO:0003676|GO:0005524
Aev09g2300 939 Gene3D - 797 870 - -
Aev09g2300 939 Coils Coil 294 323 - -
Aev09g2300 939 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 590 731 IPR001650 -
Aev09g2300 939 Gene3D PLAT/LH2 domain 49 158 - -
Aev09g2300 939 Gene3D - 292 560 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2300 Aev-Chr9 25443455 25449622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2300 384 728 Eukaryotic Initiation Factors Gene Family AT1G72730 30.286 3.97e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2300 K16911 - gmx:100820207 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2300 09 25443455 25449622 Aev09g2300 09 25443455 25449622 ECH