Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2283 ATGGGAAGAGGAAGGGTGGTTCTGGAGAGAATACACAACAAGATAAACCGGCAAGTAACGTTCTCAAAGCGAAGGAGCGGTTTGCTGAAGAAAGCTTTTGAGCTTTCAGTTCTTTGGGATGCTGAAGTCGCTCTCATCATCTTCTCTTCCCGTGGCAAGCTTTTCCAGTACAGCACCACCGACATTAACAGGATCATTGACAAGTATCGTCAATGTTGCTTCAACGTGTCACAGGCTCGGGACTTAGCTGAACTTCAGTCTCAGACCTTATTATACGAGGAACTTCTGAAATTAAGAGCCAAGCATGATACTCTTCAGCGAACACAAAGGCATTTGCTGGGAGAGGAACTTGAGCCACTTAGCTTGCAAGAATTGGAAAATCTTGAGAAACAATTGGAGGCAACGCTTACACAAGCTCGACAATTACAAAAGCATAAGCTTATGGCACGACTTAACGAATTACGTAAACAGGTGCATGACCTTGAGGTGGACAACATAGATTTAAAATCCAAGGAAAGAGATATATGCACTCAACGTTGTGAAGTTTCTGATGATTCATGTCATTCGACCCCGTTTGGCTACGATGGTTTGGGCATAAGCAAGAAGCAGTGTCAAAAGGATCCAAGAAGTCATCATAACATGAATAATAATGGATGGCTGCTTTGA 666 0.4309 MGRGRVVLERIHNKINRQVTFSKRRSGLLKKAFELSVLWDAEVALIIFSSRGKLFQYSTTDINRIIDKYRQCCFNVSQARDLAELQSQTLLYEELLKLRAKHDTLQRTQRHLLGEELEPLSLQELENLEKQLEATLTQARQLQKHKLMARLNELRKQVHDLEVDNIDLKSKERDICTQRCEVSDDSCHSTPFGYDGLGISKKQCQKDPRSHHNMNNNGWLL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2283 221 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev09g2283 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev09g2283 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 Coils Coil 122 171 - -
Aev09g2283 221 PANTHER MADS BOX PROTEIN 1 186 - -
Aev09g2283 221 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Aev09g2283 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 186 - -
Aev09g2283 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Aev09g2283 221 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Aev09g2283 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev09g2283 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2283 Aev-Chr9 25350013 25352392 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2283 1 160 MADS-box Gene Family AT1G24260 55.090 3.35e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev09g2283 K-box 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2283 K09264 - gmx:100778860 236.884