Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev09g2271 | ATGGACGTAGACGGGGACAACAAGCGTGTGTTCCACAGGCTCGGTGGAACCATGGGGGACACGAGGCAGCACCAGAACCAGAAGAAAGTGTGCTTTCATTGGCAAGCCGGAAAGTGCCACAGGCACCCCTGCCCCTTTCTTCACAGCGACCCACCTCCTTCGACCGCCCTCAACGGCGGCGGCGGTAGCATATACTGGAACCGCAACCACAGGGATAATAATCAGGGGTTTTCAGGTCCCCGCCGGAGCTCGAACTTTAATGGCACTTCGACGTGGGGCCGCGGTGGGGGCGGTAATAGAGTAGTTAGGAAAGCTGATAAAGTGTGTAATTATTGGGTTCAAGGGGACTGTAGTTATGGGGATAGGTGTAAGTTTCTTCATTCTTGGAATTCAGGGGATGGTTTTTCTTTGTTGACCCAGCTTGAAGGCCATAGGAAGGTTGTGAGTGGAATAGCTCTGCCTTCAGGTTCTGATAAGCTTTATACTGGAAGTATCGATGAGACTGTCAGAGTTTGGGACTGCCAATCCGGAAAGTGTACTGCTGAGATAACTCTTGGTGGTGAAGTAGGATGCATGATCAGTGAAGGCCCTTGGATTTTTGTAGGCATACCCAATTGCGTTAAGGCCTGGAACACTCAAACTTCTTTGGAGCTAAGTCTGAATGGCCCTGTTGGACAAGTTTATGCTCTTGTTGTGAATAATGATATTCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGTTGCCAATGTCTTTGAGCCAGCTGCATCACTTACAGGTCATTCCCGTGGTGTTGTTTCATTAGTAGTTGGAGCCAATAGACTCTACTCTGGATCAATGGACAATACAATAAGAGTATGGAACCTTGAAACTTTACAGTGTCGACAGACATTAACCGATCACACATCTGTTGTGATGTCCGTTCTCTGCTGGGACCAGTTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTCTGGGTTGCTACAGAAAGTGGAAACTTGGAAGTAACATACACTCACAAAGAAGAACATGGTGTAGTTACCCTATGTGGGGTGTTTGATTCACAAGGCAAGCCCGTTTTGCTTTGCTCTTGCAATGATAATACAGTGCGCCTCTATGAGTTACCATCATTTTCAGAAAGAGGGAAGATATTCACAAAACAAGAGATACGAACAATTCAGATGGGGCCTGGTGGCATATTCTTCACCGGTGATGGAACAGGTCTAGTGAGAGTGTGGAATTGGTTAACATCAGAGCTAACTGCTTCCATGCAATAG | 1299 | 0.4657 | MDVDGDNKRVFHRLGGTMGDTRQHQNQKKVCFHWQAGKCHRHPCPFLHSDPPPSTALNGGGGSIYWNRNHRDNNQGFSGPRRSSNFNGTSTWGRGGGGNRVVRKADKVCNYWVQGDCSYGDRCKFLHSWNSGDGFSLLTQLEGHRKVVSGIALPSGSDKLYTGSIDETVRVWDCQSGKCTAEITLGGEVGCMISEGPWIFVGIPNCVKAWNTQTSLELSLNGPVGQVYALVVNNDILFAGTQDGSILAWKFNVVANVFEPAASLTGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCRQTLTDHTSVVMSVLCWDQFLLSCSLDKTVKVWVATESGNLEVTYTHKEEHGVVTLCGVFDSQGKPVLLCSCNDNTVRLYELPSFSERGKIFTKQEIRTIQMGPGGIFFTGDGTGLVRVWNWLTSELTASMQ* | 433 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev09g2271 | 432 | Gene3D | - | 117 | 217 | IPR015943 | GO:0005515 | |
Aev09g2271 | 432 | MobiDBLite | consensus disorder prediction | 68 | 94 | - | - | |
Aev09g2271 | 432 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 141 | 182 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 297 | 334 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 257 | 294 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 384 | 421 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 134 | 173 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 340 | 381 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | SMART | WD40_4 | 213 | 250 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | Pfam | Zinc finger domain | 109 | 127 | - | - | |
Aev09g2271 | 432 | Gene3D | - | 9 | 60 | - | - | |
Aev09g2271 | 432 | MobiDBLite | consensus disorder prediction | 68 | 97 | - | - | |
Aev09g2271 | 432 | PANTHER | - | 1 | 426 | IPR044715 | - | |
Aev09g2271 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 25 | 51 | IPR000571 | GO:0046872 | |
Aev09g2271 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 103 | 130 | IPR000571 | GO:0046872 | |
Aev09g2271 | 432 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 141 | 173 | - | - | |
Aev09g2271 | 432 | SUPERFAMILY | WD40 repeat-like | 135 | 432 | IPR036322 | GO:0005515 | |
Aev09g2271 | 432 | PRINTS | G protein beta WD-40 repeat signature | 321 | 335 | IPR020472 | - | |
Aev09g2271 | 432 | PRINTS | G protein beta WD-40 repeat signature | 281 | 295 | IPR020472 | - | |
Aev09g2271 | 432 | PRINTS | G protein beta WD-40 repeat signature | 160 | 174 | IPR020472 | - | |
Aev09g2271 | 432 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 426 | - | - | |
Aev09g2271 | 432 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 264 | 297 | - | - | |
Aev09g2271 | 432 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 264 | 303 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 281 | 295 | IPR019775 | - | |
Aev09g2271 | 432 | Pfam | WD domain, G-beta repeat | 299 | 333 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | Pfam | WD domain, G-beta repeat | 260 | 294 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | Pfam | WD domain, G-beta repeat | 137 | 173 | IPR001680 | GO:0005515 | |
Aev09g2271 | 432 | Gene3D | - | 219 | 432 | IPR015943 | GO:0005515 | |
Aev09g2271 | 432 | SUPERFAMILY | CCCH zinc finger | 104 | 128 | IPR036855 | GO:0046872 | |
Aev09g2271 | 432 | SMART | c3hfinal6 | 26 | 50 | IPR000571 | GO:0046872 | |
Aev09g2271 | 432 | SMART | c3hfinal6 | 105 | 129 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev09g2271 | Aev-Chr9 | 25280133 | 25283169 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev09g2271 | 236 | 430 | Miscellaneous Gene Families | AT5G08390 | 27.805 | 1.96e-08 | 54.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Aev09g2271 | WD40 | 0.0025 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev09g2271 | - | - | gmx:100792089 | 674.47 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev09g2271 | 09 | 25280133 | 25283169 | Aev09g2271 | 09 | 25280133 | 25283169 | ECH |