Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2271 ATGGACGTAGACGGGGACAACAAGCGTGTGTTCCACAGGCTCGGTGGAACCATGGGGGACACGAGGCAGCACCAGAACCAGAAGAAAGTGTGCTTTCATTGGCAAGCCGGAAAGTGCCACAGGCACCCCTGCCCCTTTCTTCACAGCGACCCACCTCCTTCGACCGCCCTCAACGGCGGCGGCGGTAGCATATACTGGAACCGCAACCACAGGGATAATAATCAGGGGTTTTCAGGTCCCCGCCGGAGCTCGAACTTTAATGGCACTTCGACGTGGGGCCGCGGTGGGGGCGGTAATAGAGTAGTTAGGAAAGCTGATAAAGTGTGTAATTATTGGGTTCAAGGGGACTGTAGTTATGGGGATAGGTGTAAGTTTCTTCATTCTTGGAATTCAGGGGATGGTTTTTCTTTGTTGACCCAGCTTGAAGGCCATAGGAAGGTTGTGAGTGGAATAGCTCTGCCTTCAGGTTCTGATAAGCTTTATACTGGAAGTATCGATGAGACTGTCAGAGTTTGGGACTGCCAATCCGGAAAGTGTACTGCTGAGATAACTCTTGGTGGTGAAGTAGGATGCATGATCAGTGAAGGCCCTTGGATTTTTGTAGGCATACCCAATTGCGTTAAGGCCTGGAACACTCAAACTTCTTTGGAGCTAAGTCTGAATGGCCCTGTTGGACAAGTTTATGCTCTTGTTGTGAATAATGATATTCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGTTGCCAATGTCTTTGAGCCAGCTGCATCACTTACAGGTCATTCCCGTGGTGTTGTTTCATTAGTAGTTGGAGCCAATAGACTCTACTCTGGATCAATGGACAATACAATAAGAGTATGGAACCTTGAAACTTTACAGTGTCGACAGACATTAACCGATCACACATCTGTTGTGATGTCCGTTCTCTGCTGGGACCAGTTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTCTGGGTTGCTACAGAAAGTGGAAACTTGGAAGTAACATACACTCACAAAGAAGAACATGGTGTAGTTACCCTATGTGGGGTGTTTGATTCACAAGGCAAGCCCGTTTTGCTTTGCTCTTGCAATGATAATACAGTGCGCCTCTATGAGTTACCATCATTTTCAGAAAGAGGGAAGATATTCACAAAACAAGAGATACGAACAATTCAGATGGGGCCTGGTGGCATATTCTTCACCGGTGATGGAACAGGTCTAGTGAGAGTGTGGAATTGGTTAACATCAGAGCTAACTGCTTCCATGCAATAG 1299 0.4657 MDVDGDNKRVFHRLGGTMGDTRQHQNQKKVCFHWQAGKCHRHPCPFLHSDPPPSTALNGGGGSIYWNRNHRDNNQGFSGPRRSSNFNGTSTWGRGGGGNRVVRKADKVCNYWVQGDCSYGDRCKFLHSWNSGDGFSLLTQLEGHRKVVSGIALPSGSDKLYTGSIDETVRVWDCQSGKCTAEITLGGEVGCMISEGPWIFVGIPNCVKAWNTQTSLELSLNGPVGQVYALVVNNDILFAGTQDGSILAWKFNVVANVFEPAASLTGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCRQTLTDHTSVVMSVLCWDQFLLSCSLDKTVKVWVATESGNLEVTYTHKEEHGVVTLCGVFDSQGKPVLLCSCNDNTVRLYELPSFSERGKIFTKQEIRTIQMGPGGIFFTGDGTGLVRVWNWLTSELTASMQ* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2271 432 Gene3D - 117 217 IPR015943 GO:0005515
Aev09g2271 432 MobiDBLite consensus disorder prediction 68 94 - -
Aev09g2271 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 297 334 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 257 294 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 384 421 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 134 173 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 340 381 IPR001680 GO:0005515
Aev09g2271 432 SMART WD40_4 213 250 IPR001680 GO:0005515
Aev09g2271 432 Pfam Zinc finger domain 109 127 - -
Aev09g2271 432 Gene3D - 9 60 - -
Aev09g2271 432 MobiDBLite consensus disorder prediction 68 97 - -
Aev09g2271 432 PANTHER - 1 426 IPR044715 -
Aev09g2271 432 ProSiteProfiles Zinc finger C3H1-type profile. 25 51 IPR000571 GO:0046872
Aev09g2271 432 ProSiteProfiles Zinc finger C3H1-type profile. 103 130 IPR000571 GO:0046872
Aev09g2271 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 173 - -
Aev09g2271 432 SUPERFAMILY WD40 repeat-like 135 432 IPR036322 GO:0005515
Aev09g2271 432 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Aev09g2271 432 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Aev09g2271 432 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Aev09g2271 432 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 426 - -
Aev09g2271 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Aev09g2271 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515
Aev09g2271 432 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Aev09g2271 432 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515
Aev09g2271 432 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Aev09g2271 432 Pfam WD domain, G-beta repeat 137 173 IPR001680 GO:0005515
Aev09g2271 432 Gene3D - 219 432 IPR015943 GO:0005515
Aev09g2271 432 SUPERFAMILY CCCH zinc finger 104 128 IPR036855 GO:0046872
Aev09g2271 432 SMART c3hfinal6 26 50 IPR000571 GO:0046872
Aev09g2271 432 SMART c3hfinal6 105 129 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2271 Aev-Chr9 25280133 25283169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2271 236 430 Miscellaneous Gene Families AT5G08390 27.805 1.96e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev09g2271 WD40 0.0025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2271 - - gmx:100792089 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2271 09 25280133 25283169 Aev09g2271 09 25280133 25283169 ECH