Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2262 ATGCGACGATGCAACTTCGCTGAGATCCGCATCTTTGTGTTGTGTTGTGTGGGTCAACTCAACAGCCAAAATATCTCCCTCTGCTTAGGGTTCGTTATTACACTTCCCTCTCTCCTTGCTCTTACTCCTTCCTCCTCCCCAAGGAAAAACCGAGATCTGGGATCTGCAACCGTTGGGTTCGAGGTTTTGATCGTTTTCGAAGCTCTTCCTGTTGTCAATTGTAGATCTAACTACAATCTTTTCTGCAAACATGTGGTGGATGATGTAAATATTTTTAGATTTCGGTTGGGTGGTGGTATTATATGGAAAATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCCGAGTTGGAGCGGCTTTTCAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTCATTTATATGGAAGATGATAGAGATGCTGAGGCTGCCATTCGTGCACTTGATCGAGTTGAATTTGGTCGGAAGGGGCGCAGACTTCGTGTTGAATGGACTAAGCATGAACGCGGCATTAGAAGGCCTGCTAATTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAAACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGCCAGTGTGAGGATTAGAAGGAATTTCGCTTTTGTTCAGTATGAATCAGAGGATGATGCCAGCAAAGCCCTGGAAGCTACAAATATGAGCAAGTTATTGGATCGAGTTATTTCGGTTGAATTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGATATAGCCCAGAGAGAGGCCGTGATCGCCAACGTGATAGAAGCCGCGATGGAAGGCGATCACCCAGCCCTTATCGTAGAGAAAGGGGTAGCCCTGACTATGGCCGTGGAGCCAGTCCGTACAAGAGAGAAAGGACTAGCCCTGATTATGGCCGTGGTCGTAGCCGGAGCCGTAGCAGAAGTCCACCTCGGAGGGAGCAAGCTAGTCCTGCTTATGGGCGCAGAAGCCCTAGTCCATATGGAAGAGAGAGGGATGGATCTGACCCTACTCGTGGCTCTAGCCGCAGTCCTATTCAGAAAGAGCGAGCAGGAAATGAACATGGCATCTCTCCCTCCCATAGTCCTGATGGAAGGGATAGGAGAAGCCCTCAAAATGGCCGTGATTCTAGCCGTAGTCCTTATGATGCTGAGAAGGCTAGTCCTGAAAATGGCCATGGCTCTATAGGTAGTCCTGATGCAAAAGGGAACCCTAGCCCTTACAATGGTTATGGGGGAAGCCCAAATACTGTGCCTGAGCCCAAGGACAGTCCCAACTATGGTGGTCCTGAAAGCCCCATGCAGCATGAAAGATCCCGCAGCCAGTCACCCCCGGCAGAAGAATGA 1431 0.4808 MRRCNFAEIRIFVLCCVGQLNSQNISLCLGFVITLPSLLALTPSSSPRKNRDLGSATVGFEVLIVFEALPVVNCRSNYNLFCKHVVDDVNIFRFRLGGGIIWKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRVEFGRKGRRLRVEWTKHERGIRRPANSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAVKDDDDRRGGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGASPYKRERTSPDYGRGRSRSRSRSPPRREQASPAYGRRSPSPYGRERDGSDPTRGSSRSPIQKERAGNEHGISPSHSPDGRDRRSPQNGRDSSRSPYDAEKASPENGHGSIGSPDAKGNPSPYNGYGGSPNTVPEPKDSPNYGGPESPMQHERSRSQSPPAEE* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2262 476 SUPERFAMILY RNA-binding domain, RBD 105 272 IPR035979 GO:0003676
Aev09g2262 476 CDD RRM1_AtRSp31_like 105 176 - -
Aev09g2262 476 SMART rrm1_1 199 265 IPR000504 GO:0003723
Aev09g2262 476 SMART rrm1_1 106 173 IPR000504 GO:0003723
Aev09g2262 476 MobiDBLite consensus disorder prediction 388 411 - -
Aev09g2262 476 MobiDBLite consensus disorder prediction 271 339 - -
Aev09g2262 476 Gene3D - 189 278 IPR012677 -
Aev09g2262 476 Gene3D - 103 188 IPR012677 -
Aev09g2262 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 269 IPR000504 GO:0003723
Aev09g2262 476 CDD RRM2_AtRSp31_like 199 268 - -
Aev09g2262 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Aev09g2262 476 Coils Coil 475 476 - -
Aev09g2262 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 262 IPR000504 GO:0003723
Aev09g2262 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 165 IPR000504 GO:0003723
Aev09g2262 476 PANTHER BNAC08G47240D PROTEIN 107 314 - -
Aev09g2262 476 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 107 314 - -
Aev09g2262 476 MobiDBLite consensus disorder prediction 271 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2262 Aev-Chr9 25189998 25193870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2262 103 272 Eukaryotic Initiation Factors Gene Family AT1G49760 24.064 2.60e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2262 K12893 - gmx:100781534 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2262 09 25189998 25193870 Aev09g2262 09 25189998 25193870 ECH