Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2241 ATGCCTAAGCGCAAGGTATCAAACTCCAGTGTAACAAATAAATTCAACAACAGTTTAAATGATAGGAATGAAAAATCAGAGGAGGAATTAGGCATGAAGAAATTGAAGAAACACGTTCTTCAGGGTCCTTCAGATGGGGTTGATGACTCAAGAGATCAGTCTGAAGACCTCCTAGAAGAAGATCCAGAGGAGGAATCATGTGAGGAGCAAGAGGAAGATCCAGAGGAGGAATCAGGTGAGGAACTAGAGGAAGATCCGGAAGAAGAATCAGGTGAGGAACTAGAAGACGGTCTAGAGGAGGGATCAGGTGAGGAGCTAGAGGAAGATCCAGTGGAGGAATCAGGTGAGGAACTAGAGAAAGAAGAGAGAGATCCAGAGGAGGAATCAGGTGAGGAAGTGGATGAAGATCCAGAGGAGGAATCAGTTGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGTTGAGGAACTGAAGGAAGATCTAGAGGAGGCATCAGGTGAGAAACTAGAGAAAGATCCAAAGGAGAAATCAGATGAGGAACTAGAGGAAGATCCGGAGGAGGAATCGGGTGAAGAATTGGAGGAAGATCAAGAGGAGGAATCAGGTGAGGAACGAGAAGAAGATCTAGAGGAGGTATCAGGTGAGGAGCAAGAAGAAGAGCTAGGGAAGGAATCAGGTGAGGAACAAGAAGAAGAGCTAGAGGAGGAATCAGAATCGGGTGAGGAATTGGAGGAAGATCAAGAGAAGGAATCAGGTGAGGAACAAGAAGAAGATCTAGAGGAGGTATTAGGTGAGGAACAACAAGAAGAGCTAGAGGAGGAATCAGGTGAGGAACAAGAAGAAGAGCTACAGGAGGAATCAGGACAGGAACTAGAGGAAGATCCTAAAGATGATCCAGAAATAAATAACAAACAAGGGAATCCATCAGGTAATGAAGTTCCACTATTCTCTCAGGCACCATTATATCAATCACAAAAGAAGTACATACAGGAGGGAATGCGAAGCCAAGAGTCAGTATCAAAACCTTTAAGTCTGGAGCTCAGTAATGACACAGTGGTTTCTGCAGCACCTACTGATAAATCTGGATCTAAATTAAGTGCAGGAAGTTCTGGAAAACGAAGGCGCAGCAGATGGGAACCACAGCCTGATGGAGATGGAATGAAAAAAGATGATAGAACGTCCAAAAGGTGGACAACCAGGTGGTCTAGTGAAGAAATTCAAATGAAAATGATGGGCCCACTTCGAGCGCCTGACTTCACGGAGAATTTTGCCATTGGATCAAATAAGGAACCACAAATTTGGGGACTGAAATCTGAGCTATTGGAGATTAACATAAAGTTGCAAAGTTCTATTATTGATGATAGGCCTGAGGAGGAAAGGTCTCCTTCTCCTAATCCAGTTTATGATAACCTTGGCATCAGATTAAATACAAGAGACGTAAGAATACGTCGTAGACTTACTCAGAAACGTCAAAATATCATATCAAAGTTGATCAAATTAGACCCAACTTTTAACCCTCCTCCTGATTTTAGGCCCCAAAAGTTCGTTAAAAAAGTTTACATACCAGTTAAGGAATATCCGGAATACAATTTTATTGGACTTATAATTGGTCCTCGTGGAAACACACAGAAGAGGATGGAAAAGGAAACTGGGGCAAAGATTCTTTTAAGAGGTAAAGGCTCGTTAAAAACACCCAGCAAAAATGACTCTGAAGAAGATGATTTACATGTTCAAATAGAAGCAAAGGACCCAGAATCACTGGATGCAGCAGTTACCATGGTTGAGAAACTGCTAGTTCCAATTGAAGAAGGAAGAAATGAGCACAAGCGTGCACAATTAAGGGAGCTGGCTGAGCTGAGTGCAACTCAGAGAGATGAAAATGTCTGCAGTGTATGTGGTGATCAGGGACACAGACATTATGCATGCCCTAACCTTCAATCAACTTTCAAAATGGATTCATTTGACACTGGTTGTAGCAATACCCTTTCAACACCTACCTTCCCTGTGACTGCATTGTTCCCACACAGTTCTTCTTTAACGGGCTCTGGATTAAGTCTCAGTTCAATGCAGAACAGACAAACAAAGCCTGGAAAAGAAATCAGTGACAAAAATCTTTATGTTGGCTATCTACCGCAATCAGTTGATGATCATAGATTGAGTGAGCTGTTTTCTCCATTCGGTAAGATCACTGAAGCAAAAGTTGTGAAGGATCGGTCCACCGGAATCAGTAAAGGTTACGGCTTTGTCAAATTTGAAGATTCAAAGGAAGCAGCATTAGCTATAGCACATTTAAACGGTTTCAAAATTGATGGAAAGCTTTTGAAAGTGCGGATAGCAGGTCTCCAGCCAAATAATGAAATCCCACGCCTGAACCCGATTCCGCTGATCCCGGGGCATGCAGCTCTATCAACAAATATCACAAACCAAACTGATCTACCTGGTCCATTACATTTCATGCTGCCAGAACATCAATCTTCATTTGATGGCAGCAGTAGCACAAATATGTTTTCTTGTTCTGTCAACTCAGAGCATGGTAATCCTATGAAGGCAAAGGCTCTAGCCTTTACTCCTCCGGGAAACAATTTGATCTCTCCTCATTTTGGTTATTCTTCTGGCAATATGCAATTTTCAGGCAATTTTTCAGATCAAAGTTTGTTCTCATCAAATAATTCAACTGCACAGTTTCCTGGTGACCCAGGCAATCATGGTAATTTCAATCCTTTTTTATGA 2730 0.4223 MPKRKVSNSSVTNKFNNSLNDRNEKSEEELGMKKLKKHVLQGPSDGVDDSRDQSEDLLEEDPEEESCEEQEEDPEEESGEELEEDPEEESGEELEDGLEEGSGEELEEDPVEESGEELEKEERDPEEESGEEVDEDPEEESVEELEEDPEEESVEELKEDLEEASGEKLEKDPKEKSDEELEEDPEEESGEELEEDQEEESGEEREEDLEEVSGEEQEEELGKESGEEQEEELEEESESGEELEEDQEKESGEEQEEDLEEVLGEEQQEELEEESGEEQEEELQEESGQELEEDPKDDPEINNKQGNPSGNEVPLFSQAPLYQSQKKYIQEGMRSQESVSKPLSLELSNDTVVSAAPTDKSGSKLSAGSSGKRRRSRWEPQPDGDGMKKDDRTSKRWTTRWSSEEIQMKMMGPLRAPDFTENFAIGSNKEPQIWGLKSELLEINIKLQSSIIDDRPEEERSPSPNPVYDNLGIRLNTRDVRIRRRLTQKRQNIISKLIKLDPTFNPPPDFRPQKFVKKVYIPVKEYPEYNFIGLIIGPRGNTQKRMEKETGAKILLRGKGSLKTPSKNDSEEDDLHVQIEAKDPESLDAAVTMVEKLLVPIEEGRNEHKRAQLRELAELSATQRDENVCSVCGDQGHRHYACPNLQSTFKMDSFDTGCSNTLSTPTFPVTALFPHSSSLTGSGLSLSSMQNRQTKPGKEISDKNLYVGYLPQSVDDHRLSELFSPFGKITEAKVVKDRSTGISKGYGFVKFEDSKEAALAIAHLNGFKIDGKLLKVRIAGLQPNNEIPRLNPIPLIPGHAALSTNITNQTDLPGPLHFMLPEHQSSFDGSSSTNMFSCSVNSEHGNPMKAKALAFTPPGNNLISPHFGYSSGNMQFSGNFSDQSLFSSNNSTAQFPGDPGNHGNFNPFL* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2241 909 MobiDBLite consensus disorder prediction 20 51 - -
Aev09g2241 909 Gene3D K Homology domain, type 1 507 631 IPR036612 GO:0003723
Aev09g2241 909 SMART rrm2_1 704 777 IPR003954 GO:0003676
Aev09g2241 909 MobiDBLite consensus disorder prediction 161 178 - -
Aev09g2241 909 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 335 660 - -
Aev09g2241 909 PANTHER RNA-BINDING PROTEIN RELATED 697 816 IPR045071 -
Aev09g2241 909 PANTHER RNA-BINDING PROTEIN RELATED 335 660 IPR045071 -
Aev09g2241 909 MobiDBLite consensus disorder prediction 179 296 - -
Aev09g2241 909 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 697 816 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 52 160 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 887 909 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 302 319 - -
Aev09g2241 909 SMART kh_6 513 599 IPR004087 GO:0003676
Aev09g2241 909 Pfam KH domain 530 595 IPR004088 GO:0003723
Aev09g2241 909 Gene3D - 678 786 IPR012677 -
Aev09g2241 909 Gene3D - 428 506 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 350 369 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 372 399 - -
Aev09g2241 909 CDD SF1_like-KH 517 624 - -
Aev09g2241 909 ProSiteProfiles Type-1 KH domain profile. 530 594 - -
Aev09g2241 909 Coils Coil 216 286 - -
Aev09g2241 909 SUPERFAMILY RNA-binding domain, RBD 691 779 IPR035979 GO:0003676
Aev09g2241 909 MobiDBLite consensus disorder prediction 1 19 - -
Aev09g2241 909 MobiDBLite consensus disorder prediction 324 343 - -
Aev09g2241 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 705 774 IPR000504 GO:0003723
Aev09g2241 909 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 515 631 IPR036612 GO:0003723
Aev09g2241 909 MobiDBLite consensus disorder prediction 1 319 - -
Aev09g2241 909 Pfam Splicing factor 1 helix-hairpin domain 399 511 IPR032570 -
Aev09g2241 909 MobiDBLite consensus disorder prediction 350 399 - -
Aev09g2241 909 SMART rrm1_1 704 777 IPR000504 GO:0003723
Aev09g2241 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 703 781 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2241 Aev-Chr9 25040285 25043014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2241 628 784 Eukaryotic Initiation Factors Gene Family AT3G11400 31.707 4.52e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2241 K13095 - csin:114293476 534.643