Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2132 ATGTCCTTCCGTAGTATAGTTCGTGATGTAAGGGATGGAATTGGAAGCTTATCGAGGCGCAGTTTTGATTTAAGGCTCACTGGCCATCACAGGGGCAAGTCACGTAGTTCAGTTCATGAGCTGCATGATCAGCCTCCGGTTGTACAGAACAGCCGGTGGGCTAGCCTTCCGCCGGAGCTTCTTCGTGATGTTATTAAGAGATTAGAAGCAAGTGAGACTTCCTGGCCTGGCCGTAAGCACGTGGTAGCATGTGCAGCTGTGTGCAAAGCATGGCGAGAAATGTGCAAAGAAATTGTCAGCAATCCTGAATACTGTGGGAAGATTACTTTCCCTATTTCCCTGAAGCAGCCTGGATATAGGGATGGACCTATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCGTCTCTTCCTTTGCCTCAGTCCTGCCTTGCTCGTTGAAAATGGAAAGTTTCTTCTCGCTGCGAAACGGACCAGAAGAACGACTTGCACAGAGTATATCATATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTATATAGGAAAATTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACGCAGCCTCCCTATAACAATGCTCAGCTGTCTCCACCAGGCCGAAGCCGCCGGTTTAATTCAAAAAAGGTTTCTCCAAAGGTGCCTAGCGGCAGCTACAATATTGCCCAGGTTAACTATGAGTTGAATGTACTTGGTACTAGGGGCCCAAGAAGGATGCACTGCACCATGTACTCGATCCCCACATCATGCCTTGAGCCTGGTGGCACTGTCCCAGGCCAGCCAGAGCTTCTTCCTCCCTCCCTCGAGGATTCTTTCAGGAGTATATCCTTCTCGAGGTCAATCGGCCATTCAACCGACTTTAGCAGCTCCAGATTCTCAGACATAATGGGAACCAGCAACGAGGAGGAAGAGGGAAAGGAGAGACCACTAGTTCTTAAGAACAAGCCGCCAAGATGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCCGTGGCAGGGTGACCGTTGCGTCTGTCAAGAATTTTCAGCTGATCGCGGCAACTCAGCCCCCGGCTGCTGGTCCTGCTGGAGCAGGACCAACACAATCTCAGCCATCACAGTCTGATCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGATACCCGCTGTCGGCATTTCAGGCCTTTGCGATATGCTTGACTAGCTTTGACACCAAACTGGCATGTGAATAG 1290 0.4845 MSFRSIVRDVRDGIGSLSRRSFDLRLTGHHRGKSRSSVHELHDQPPVVQNSRWASLPPELLRDVIKRLEASETSWPGRKHVVACAAVCKAWREMCKEIVSNPEYCGKITFPISLKQPGYRDGPIQCFIKRDKSKLTYRLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPTSCLEPGGTVPGQPELLPPSLEDSFRSISFSRSIGHSTDFSSSRFSDIMGTSNEEEEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGPAGAGPTQSQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2132 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Aev09g2132 429 MobiDBLite consensus disorder prediction 304 324 - -
Aev09g2132 429 Gene3D - 48 101 - -
Aev09g2132 429 Pfam Tub family 114 424 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Aev09g2132 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Aev09g2132 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 429 - -
Aev09g2132 429 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Aev09g2132 429 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Aev09g2132 429 Pfam F-box domain 53 101 IPR001810 GO:0005515
Aev09g2132 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Aev09g2132 429 Gene3D Tubby Protein; Chain A 111 429 IPR025659 -
Aev09g2132 429 PANTHER TUBBY-RELATED 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2132 Aev-Chr9 24335998 24337865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2132 1 429 TUB Transcription Factor Family AT1G76900 69.063 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev09g2132 Tub 5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2132 K19600 - qsu:111992792 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2132 09 24335998 24337865 Aev09g2132 09 24335998 24337865 ECH
Aev05g2803 05 29048282 29050661 Aev09g2132 09 24335998 24337865 PCT