Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2094 ATGGCGGCGGCGATTTCATCACCGACGGGACAGTCAGTGACGGCGGCGGCTGTGATTGGCGGAGTAGGGCCATTCTCGAACGCGTCGTTGTACGTGGGGGATCTCGATGGGAGTGTGAACGAAGGACAACTGTTTGATCTGTTCAGCCAGGTTGGTCCCATTGCATCCATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTCGGATACGCTTACGTCAACTTTGCTCACGCTCAGGATGCTGCTAGTGCTTTGGAACTTCTTAACTTTACCCATCTGAATGGGAAACCAATTCGAATTATGTTTTCTCAACGGGATCCTAGCATTCGGAAAAGTGGTTATGCCAATGTGTTCATCAAGAACCTGGACACATCAATTGACAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCTCTGTACTATCTTGTAAGATTGCTGTTGACAACAATGGTCAATCAAGAGGGTATGGTTTTGTACAGTTTGACAATGAAGAGGCTGCTCAGAATGCCATCAATCAGTTGAATGGCATGTTGATAAATGATAAACAAGTCTTTGTTGGACACTTTGTTCGACACCAGGAAAGGGCTAGGATAAATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCTGAAACATATACTGATGATGACCTGATGCAGCTCTTTGGCCCCTGTGGTTCCATAACAAGTGCAACTGTCATGAAAGATGCAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTTCAGAGTCCAGATTCAGCGGCTGCTGCAGTTGAGAGGTTGAATGGAACAACTATCAATGATGACAAGGTTTTATATGTTGGGAGAGCTCAGAGGAAGGTGGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGCAAATATGAGAAGTTACAAGGTGCAAATTTGTACTTGAAAAATCTTGATGACAGCTTCAACGATGAGAAGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTTATGCTTGATTCACAAGGGCATAGCAAGGGGTCTGGTTTCGTGGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGATGGGACGTAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGAGTGGCTCGTTTGCAGGCTCATTTTGCTCAAATTCGATCACCGGGAGGCATGGCACCTTTGCATGCTGGAATTCATGGATATCATCCAGGGGCACCAAGGATTGCCCCTCAACAATTGTATTTCGGTCAAGGATCACCTGGCTTCATGCCACCACAGCCTGCTGGGTTTGGTTTCCAGCAGCAAATCATGCCTGGAGTGCGGCCTAGTGTTGCTCCAAATTTCATTATGCCTTACCACCTTCAAAGACAGGGTCAGCCTGGGCAGAGGATGGGCATTCGACGAGGTGGAAACCTCCAACAGGTGCAGCAGAACCAGATGCTGCATCGTAACTCCAACCAAGGGTTTAGATATATGGGCAACAGCCGAAATGGTATGGATCCATCTGCAATTCCTCAAGGTCTAGTCGGTCCAATGACACCGATGGGCTTTGATGGTAATGGTGTGCCCGCTATCCCGTTGTCTACCACACTTGCCTCCGCTCTGGCATCTGCAAGCCCAGAACATCAGCGTATGATGCTGGGTGAACATCTGTATCCGCTCGTGGAGCGCCTCACTCCTCAACAACCGGCAAAGGTGACGGGGATGTTGCTGGAAATGGACCAGGCAGAGGTAATCCATCTCATTGAGTCCCCTGAAGACCTAAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCACGATGCTGCTTCGGGTTCTGATGTTGGTGATCAGCTTGGTTCACTGTCTTTGAATGAATGA 1914 0.4687 MAAAISSPTGQSVTAAAVIGGVGPFSNASLYVGDLDGSVNEGQLFDLFSQVGPIASIRVCRDQTKRSSLGYAYVNFAHAQDAASALELLNFTHLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGSVLSCKIAVDNNGQSRGYGFVQFDNEEAAQNAINQLNGMLINDKQVFVGHFVRHQERARINGSPKFTNVYVKNFSETYTDDDLMQLFGPCGSITSATVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGTTINDDKVLYVGRAQRKVEREAELKAKFEQERISKYEKLQGANLYLKNLDDSFNDEKLKDLFSEFGTITSCKVMLDSQGHSKGSGFVAFSTPEEASKALNEMNGKLMGRKPLYVAVAQRKEERVARLQAHFAQIRSPGGMAPLHAGIHGYHPGAPRIAPQQLYFGQGSPGFMPPQPAGFGFQQQIMPGVRPSVAPNFIMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNSRNGMDPSAIPQGLVGPMTPMGFDGNGVPAIPLSTTLASALASASPEHQRMMLGEHLYPLVERLTPQQPAKVTGMLLEMDQAEVIHLIESPEDLKIKVSEAMQVLHDAASGSDVGDQLGSLSLNE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2094 637 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 622 IPR002004 GO:0003723
Aev09g2094 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Aev09g2094 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Aev09g2094 637 Coils Coil 280 308 - -
Aev09g2094 637 Gene3D - 117 190 IPR012677 -
Aev09g2094 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Aev09g2094 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Aev09g2094 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 185 IPR000504 GO:0003723
Aev09g2094 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Aev09g2094 637 CDD RRM4_I_PABPs 310 388 - -
Aev09g2094 637 SMART rrm1_1 312 384 IPR000504 GO:0003723
Aev09g2094 637 SMART rrm1_1 29 102 IPR000504 GO:0003723
Aev09g2094 637 SMART rrm1_1 208 281 IPR000504 GO:0003723
Aev09g2094 637 SMART rrm1_1 117 189 IPR000504 GO:0003723
Aev09g2094 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Aev09g2094 637 Gene3D - 192 290 IPR012677 -
Aev09g2094 637 SMART poly_2 557 620 IPR002004 GO:0003723
Aev09g2094 637 SUPERFAMILY RNA-binding domain, RBD 206 391 IPR035979 GO:0003676
Aev09g2094 637 Gene3D - 545 622 - -
Aev09g2094 637 Gene3D - 24 116 IPR012677 -
Aev09g2094 637 PANTHER POLYADENYLATE-BINDING PROTEIN 24 624 - -
Aev09g2094 637 SMART rrm2_1 117 189 IPR003954 GO:0003676
Aev09g2094 637 SMART rrm2_1 208 280 IPR003954 GO:0003676
Aev09g2094 637 SMART rrm2_1 29 102 IPR003954 GO:0003676
Aev09g2094 637 SMART rrm2_1 312 384 IPR003954 GO:0003676
Aev09g2094 637 Pfam Poly-adenylate binding protein, unique domain 553 617 IPR002004 GO:0003723
Aev09g2094 637 CDD RRM2_I_PABPs 114 190 IPR045305 -
Aev09g2094 637 SUPERFAMILY PABC (PABP) domain 505 621 IPR036053 GO:0003723
Aev09g2094 637 Gene3D - 291 397 IPR012677 -
Aev09g2094 637 CDD RRM3_I_PABPs 206 286 - -
Aev09g2094 637 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 617 IPR006515 GO:0003723
Aev09g2094 637 CDD RRM1_I_PABPs 29 108 - -
Aev09g2094 637 SUPERFAMILY RNA-binding domain, RBD 27 194 IPR035979 GO:0003676
Aev09g2094 637 PANTHER RNA BINDING PROTEIN 24 624 - -
Aev09g2094 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2094 Aev-Chr9 24061944 24066235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2094 27 631 Eukaryotic Initiation Factors Gene Family AT1G71770 59.585 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2094 K13126 - gmx:100783163 1032.71