Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2085 ATGGCTTCCTCTCAGCATCGTTGCGTTTTCGTTGGCAATATACCTTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGGTTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGGAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGCGAACGACAGAAATAGAGAGCAGGGTCGTGGGGGACCTGGACTGACATCAAATGTTGAGCCTCAGAAACAAATAGGCAGCTCAGCTGTCCATGGGGATGCTGTTCAACATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCATCTGTCATGACAGCAGCCCTAGGTGGTGCTCAGTTTGGCATCCAGTCTGGTCAAAATGGTTTGCAGAATCAGTCAGCATTGGCACACGATCCATTAACTCTGCATCTGGCTAAAATGTCAAGGAGTCAGCTGAATGAGATTCTCTCTGATGTCAAGGAAATGGCTACAGAGAACAAAGATATGGCTCGGCAGCTGTTGCTTTCAAGACCACATTTGCCTAAGGCTCTTTTCCAGGCTCAGATAATGCTAGGAATGGTGACTCCCCAAGTGTTACAAACGCCAAATATTAGGATGGTTTCGGATCAGACCCCACAGTCTTCAGTAAATGAAGGCCGGCTCAATCAGCCAGCATTGGTTCAACCTATGTCTGGCCTACCCCATCCTGGACAGAGCAAGTTGCAATCTGGTTTGACTCCTTATGTTCAAGAAGGTCAAGTCAACACCATACCTCATAATCCTTTGATTCCTAATCAGTTAACTACACATCCAAGGCCTCCAATGCAGCCTCGAATGCCACTTCAACAACATTCAATCAACCATATTGGACAGCTGGGAACATTGTCAGGGCAGTCAAATTTAATGCTTCCTTCAGTTAGACCCCAGCCTCTTGGTAGTTTAACTGGGAGGCCTCCAATTCAACCATCAACGTCAACAGCCCTGAACCCGCAAATGCATGCTTCTTTGCTACAGCGTTCAGCACTCAGTGGAAGCTCTACTGTAGGACATAATATTCAGATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGACCATCCATATCATCAGGCATTTCTCACTTACTTAGTAAGGAAGGTGATAGATCCACTAAAATCCTTGATGAGTTAAATCGGGCCAACAGAAGTAGTACTATGGTTCATGACTCTTCCGAATCATTTACTCGCCCTTCAAAGCTCATGAAAATGGATGAGGGAAGGAACACATCCGTTTCTACAGGGATTGCTGATGTGCCTGCACCCAATGGATCTTCCCATATTATTGGAAGTATCTCGTTGCCTATTCATGCAGCTCCTAAAGCAGAAGTGAGATACTCTGAGCAACAATCTTCACAGCCCCAGCTAACACCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAACCTAACACCCGAGCAATTGAGTTCGCTGCCACCGGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGACGCATCCATCATAG 1626 0.4582 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKANDRNREQGRGGPGLTSNVEPQKQIGSSAVHGDAVQHQPIGLHIAITAASVMTAALGGAQFGIQSGQNGLQNQSALAHDPLTLHLAKMSRSQLNEILSDVKEMATENKDMARQLLLSRPHLPKALFQAQIMLGMVTPQVLQTPNIRMVSDQTPQSSVNEGRLNQPALVQPMSGLPHPGQSKLQSGLTPYVQEGQVNTIPHNPLIPNQLTTHPRPPMQPRMPLQQHSINHIGQLGTLSGQSNLMLPSVRPQPLGSLTGRPPIQPSTSTALNPQMHASLLQRSALSGSSTVGHNIQMVRPDASFQPGPSISSGISHLLSKEGDRSTKILDELNRANRSSTMVHDSSESFTRPSKLMKMDEGRNTSVSTGIADVPAPNGSSHIIGSISLPIHAAPKAEVRYSEQQSSQPQLTPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQTHPS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2085 541 MobiDBLite consensus disorder prediction 83 108 - -
Aev09g2085 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Aev09g2085 541 Gene3D - 497 540 IPR038192 -
Aev09g2085 541 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 228 IPR025742 -
Aev09g2085 541 CDD RRM_CSTF2_CSTF2T 9 83 - -
Aev09g2085 541 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Aev09g2085 541 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aev09g2085 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aev09g2085 541 Pfam Transcription termination and cleavage factor C-terminal 503 535 IPR026896 GO:0031124
Aev09g2085 541 MobiDBLite consensus disorder prediction 514 541 - -
Aev09g2085 541 MobiDBLite consensus disorder prediction 417 436 - -
Aev09g2085 541 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 536 - -
Aev09g2085 541 Gene3D - 155 230 - -
Aev09g2085 541 Gene3D - 1 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2085 Aev-Chr9 23991255 23995585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2085 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.40e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2085 K14407 - gmx:100794399 783.482