Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2042 ATGGATCCAAAAGGGAACCTATGTTCTAACAACTGGGGCAGGTCCTCTTCCTTGACCACTCCTGGGAATGGATTGCAGACAAATATGTCATCCGATCCTTCCTCTTACTATGGAGTTAGGATTGAATCGCCTTTCAAAGAATTCAACCAACCCTCTTCAACACAGTCTTTGCTTTCAGGGGAATCTAACAAAGGTATTAAGATCCCTGACCAAGAAAATTGTTCATTGAATGACTCGTCACAGACCAACAAACTCCAAGATTGGGATCCTAGCGCGATGCTGAATAACCTTTCCTTCTTGGAGGAAAAGATTCATCAGCTCCAGGACCTGGTTCATTTGATCGTTAGCAAGAAGTGCCAACCCTTTGCACAACCCGGTGCACTCGTGACTCAGGAGCAGCAGCTCATCACAGCTGATCTCACATCAATTATCGTTCAGCTGATCTCTACGGCTGGTAGCCTTCTCCCTTCTGTTAGGAACAACCTTGCAACCACAAATCCATTGGTTGGTCAGCTTAGCCAGCTTCGCGGGATTAACCTTCCTTTTGGAACAAACCCAAATGGTGGAATTCAGCCACAAAATATCAGTGGAAATAAATTGTTCGATCAGTCCACTCAGAGTGATGTGCCTAATAACTGTGAAATGGAACAACACTACATTATGGAAGAGCACGAGACAAAGGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCATACGAGATTTTACAGTTGGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGCACAATTTGCGGGAAGGGATTCAAGAGGGACGCGAATCTCCGCATGCACATGCGAGGACATGGTGATGAGTACAAAACACCAGCAGCCCTTGCAAAGCCACACAAAGAAACCGGGTCTGAACCAAAGCTCATCAAGAGGTATTCCTGCCCATACACCGGCTGCAAGCGTAACAAGGAGCACAAGAAGTTTCAACCTCTTAAGACTATTTTGTGTGTCAAGAACCACTACAAAAGGACACACTGTGACAAGAGTTACACTTGCAGCAGATGCCATACCAAGAAGTTTTCAGTCATGGCAGACCTCAAAACTCATGAGAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCTGCAATCCCCTTGGATGACGCTAAAGGACCAGCCGGTCCACCCGATCTTGACAACAAAGATAGCAGCAGTAATAAGGTAGGAGAAAACATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTCAGAACATGATGGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCACCTTTGAACTTTGATGGCTGCAACTTTGGTGGGTTTAATGAATTCTCCCAGCCTCCATTTGAAGATTCAGATTCTTCATTCTCTTTTCTTATGTCTGGATCCTTTAACTTCACTCCTAAATCAGGAGGTGAATCAACTTCTGACAACCTGTAG 1539 0.4405 MDPKGNLCSNNWGRSSSLTTPGNGLQTNMSSDPSSYYGVRIESPFKEFNQPSSTQSLLSGESNKGIKIPDQENCSLNDSSQTNKLQDWDPSAMLNNLSFLEEKIHQLQDLVHLIVSKKCQPFAQPGALVTQEQQLITADLTSIIVQLISTAGSLLPSVRNNLATTNPLVGQLSQLRGINLPFGTNPNGGIQPQNISGNKLFDQSTQSDVPNNCEMEQHYIMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYTGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKGPAGPPDLDNKDSSSNKVGENMNFCFGSNPSSENGVQNMMDVKGNIDDPINYFSPLNFDGCNFGGFNEFSQPPFEDSDSSFSFLMSGSFNFTPKSGGESTSDNL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2042 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 - -
Aev09g2042 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Aev09g2042 512 MobiDBLite consensus disorder prediction 1 36 - -
Aev09g2042 512 SMART c2h2final6 259 281 IPR013087 -
Aev09g2042 512 SMART c2h2final6 308 341 IPR013087 -
Aev09g2042 512 SMART c2h2final6 346 368 IPR013087 -
Aev09g2042 512 MobiDBLite consensus disorder prediction 403 422 - -
Aev09g2042 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 IPR044300 GO:0010044|GO:0010447
Aev09g2042 512 MobiDBLite consensus disorder prediction 8 36 - -
Aev09g2042 512 MobiDBLite consensus disorder prediction 49 82 - -
Aev09g2042 512 Gene3D Classic Zinc Finger 243 314 - -
Aev09g2042 512 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Aev09g2042 512 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2042 Aev-Chr9 23677556 23679094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2042 227 510 C2H2 Transcription Factor Family AT1G34370 71.626 1.85e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev09g2042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2042 - - gmx:100170687 860.136