Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1850 ATGGAAGCACCAGAGGAACTCTCCTTGGGTTCCAAAGAGCACACAAACATTGTCAAAGGCAAGAGGACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCGCCGCGAACTCCTCGACTGGAGGAGAAGTGGATAGAGAAGATTTCTTCATTGCCAATGAAGATGAAAACACCACCAACACCAACAACAATAACATGGTGGTCAAAGATGATGATCAGAACAATACTAACACCAACACCAACTCTCCAACCACTTCTTCTGCAGGGCAACAAGGAAGCACAGATGAAGAGGAGGACATGGCAAACTGCTTAATCCTCTTGGCACAAGGGCAATCAAGGGAATCCCTAAAACCCGCCGTGGCGGCCGAGGAAGACGGTGGGATGAACTACAACAAGTACAGCAGTAGGAAGTTCATGGAAGCTGCAGGAGGAGGAGGAGGAGGAATTGGAGGGGGTTATGGCAAAGCAGGGTATTATGTATATGAATGCAAGACATGTAACAGAACATTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCAAGCCACAAGAAGCCAAAATCCATGGCTGCATCAATGGCAATTGGACATCAAGACAGGATTAAGCATCAACAAACACCATTCTTGTCATCAGATGAGGAAGAGTTCCAATTCAAGAACAACAAAACTAGCTTCCTTCAATTGAACACAAGAGGGAATTTGTACAGCCACAACAATAACAACAAGTCCAAAGTGCATGAGTGTTCCATTTGTGGTGCTGAATTCACATCAGGGCAAGCACTTGGTGGCCACATGAGGCGGCACCGGGCGGCGCCGGTAGGGACTAATACAACACTTTCTTTGACTCCAATGGCATTGGAGCCGGAAGAGGAACAACCTAGAAAGAGAAGGAATGTATTGTCTTTGGATTTGGATCTCAATCTTCCTGCCCCAGAAGATGATCAAAGAGAATCTAAGTTTGCCTTTGCTTCCAAGCAACAGCAGCAGCAACAGCAACAACAGCAACAGCAGCAACAAACAAATCTTGTCTTCTCCACCCCAGCTTTGGTGGATTGTCATTACTGA 1071 0.4669 MEAPEELSLGSKEHTNIVKGKRTKRVRPQSPIPFSIAANSSTGGEVDREDFFIANEDENTTNTNNNNMVVKDDDQNNTNTNTNSPTTSSAGQQGSTDEEEDMANCLILLAQGQSRESLKPAVAAEEDGGMNYNKYSSRKFMEAAGGGGGGIGGGYGKAGYYVYECKTCNRTFPSFQALGGHRASHKKPKSMAASMAIGHQDRIKHQQTPFLSSDEEEFQFKNNKTSFLQLNTRGNLYSHNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAAPVGTNTTLSLTPMALEPEEEQPRKRRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQQQQQQQQQQQQTNLVFSTPALVDCHY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1850 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 270 IPR013087 -
Aev09g1850 356 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Aev09g1850 356 MobiDBLite consensus disorder prediction 56 99 - -
Aev09g1850 356 Gene3D Classic Zinc Finger 161 270 - -
Aev09g1850 356 Pfam C2H2-type zinc finger 247 272 - -
Aev09g1850 356 Pfam C2H2-type zinc finger 162 188 - -
Aev09g1850 356 SMART c2h2final6 248 270 IPR013087 -
Aev09g1850 356 SMART c2h2final6 163 185 IPR013087 -
Aev09g1850 356 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Aev09g1850 356 MobiDBLite consensus disorder prediction 1 100 - -
Aev09g1850 356 PANTHER ZINC FINGER PROTEIN ZAT5 11 356 - -
Aev09g1850 356 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 356 - -
Aev09g1850 356 SUPERFAMILY beta-beta-alpha zinc fingers 162 270 IPR036236 -
Aev09g1850 356 MobiDBLite consensus disorder prediction 273 341 - -
Aev09g1850 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Aev09g1850 356 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g1850 Aev-Chr9 22080825 22081895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1850 1 356 C2H2 Transcription Factor Family AT5G04390 41.353 2.02e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev09g1850 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1850 - - lja:Lj5g3v1698900.1 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0301 06 2258507 2259412 Aev09g1850 09 22080825 22081895 ECH
Aev02g2258 02 23578047 23578928 Aev09g1850 09 22080825 22081895 ECH
Aev10g1955 10 20909311 20910318 Aev09g1850 09 22080825 22081895 ECH
Aev04g2933 04 29092315 29093430 Aev09g1850 09 22080825 22081895 ECH
Aev09g1850 09 22080825 22081895 Aev09g1850 09 22080825 22081895 ECH