Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1743 ATGGATTCGGATCAGGGTAAGCTATTTATCGGAGGAATATCGTGGGACACTACGGAGGACAAGCTGAAGGAGCATTTCAGCAACTATGGCGAGGTAACCAACGCTTCCGTCATGAGAGAGAAGAACACTGGCAAGCCCAGAGGCTTCGGTTTCGTCGTCTTCTCCGATCCTTCAATTCTCGATACCATTCTACAAGACAAGCACGTTATCGATGGCAGAACGGTTGATGCCAAGAAGGCCTTATCAAGAGAGGATCAACAAATTTCTGGCTCAACCAGATCTGGAAATCCCAATTCAGGTTGGAATTCTGGAAATGGAGGAAATATGAAGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACAGAAGAAAAATTCCGCCAGTACTTTGAGTCATTTGGTCATGTAACTGATGTTGTAGTCATGTACGACCAGAATACTGGCCGACCGCGCGGATTTGGTTTTATTTCTTTTGACTCTGAGGAGGCAGTTGATAGGGTTTTGTTCAAGTCATTTCATGATTTAAATGGTAAGCAGGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCCGGTGCAAGTGGCCGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGTTACCAGGGCTATGGGGCATCTGGTGGAAACCAAAATGCCTATGATGGTCGTATGGATTCAAGTAGGTATATGCAGCCACAAAACACTGCAGGCGGATTTCCACCTTATGGTTCTTCTGGTTACAGTGCTGCTGGGTATGGGTATGCTCCAGCCAATAATGGCATTGGCTATGGTGCTTATGGAGGTTATGGTGGTGCCGCTGCTGGGTATGGTGGACCTGCTGGTGCAGCATACGGGAATCCTAATGTTGCTAATGCTGCTTATGCTGGTGGTCCTCCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCTTCTAGTTATGGTTCTATGGGCTATGGGAACACTGCACCTTGGGGTGCTGCAAGTGGTGGTGCTGCATCTGGGGCTGGTGGCCCGGGTTCAGCCACTGCAGGTCAATCCCCTAGTGGAGCTGCTGGATATGGGAATCAAGCATACGGATATAGTGGGTATGGGGCGTATGGCGGAGGTGATAGTTCTTATGGGAACCCTGGTGTATACGGTGCTGTTGGAGGGCGTCCTGGGAGTGCTCCAAATAGTAATGCTAGCGGTGGTGGGAGTGAACTACAAGGTAGTGGTGGTAGTGGCAGCTATATGGGCAGTGGCTATGGAGATGCTAATGGAAATTCCGGTTATGGAAATGCAGGTTGGAGGTCTGAGCAAGCTCAAGCAGCTGGGAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCCCAGTCACGGCAAGCACAACAACAGTGA 1416 0.5014 MDSDQGKLFIGGISWDTTEDKLKEHFSNYGEVTNASVMREKNTGKPRGFGFVVFSDPSILDTILQDKHVIDGRTVDAKKALSREDQQISGSTRSGNPNSGWNSGNGGNMKTKKIFVGGLPPTLTEEKFRQYFESFGHVTDVVVMYDQNTGRPRGFGFISFDSEEAVDRVLFKSFHDLNGKQVEVKRALPKDANPGASGRAGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQNTAGGFPPYGSSGYSAAGYGYAPANNGIGYGAYGGYGGAAAGYGGPAGAAYGNPNVANAAYAGGPPGGPRSSWPAQAPSSYGSMGYGNTAPWGAASGGAASGAGGPGSATAGQSPSGAAGYGNQAYGYSGYGAYGGGDSSYGNPGVYGAVGGRPGSAPNSNASGGGSELQGSGGSGSYMGSGYGDANGNSGYGNAGWRSEQAQAAGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1743 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev09g1743 471 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Aev09g1743 471 MobiDBLite consensus disorder prediction 80 108 - -
Aev09g1743 471 MobiDBLite consensus disorder prediction 392 419 - -
Aev09g1743 471 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Aev09g1743 471 MobiDBLite consensus disorder prediction 439 471 - -
Aev09g1743 471 MobiDBLite consensus disorder prediction 84 108 - -
Aev09g1743 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Aev09g1743 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev09g1743 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Aev09g1743 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aev09g1743 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 170 IPR000504 GO:0003723
Aev09g1743 471 Gene3D - 109 227 IPR012677 -
Aev09g1743 471 Gene3D - 1 108 IPR012677 -
Aev09g1743 471 MobiDBLite consensus disorder prediction 333 352 - -
Aev09g1743 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 469 - -
Aev09g1743 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aev09g1743 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g1743 Aev-Chr9 21362351 21365092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1743 8 199 Eukaryotic Initiation Factors Gene Family AT2G23350 24.242 2.62e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1743 K14411 - gmx:100811267 517.694