Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1742 ATGGATTCGGATCAGGGTAAGCTATTTATCGGAGGGATATCATGGGACACTACAGAGGACAAGCTGAAGGACCATTTTCGCAGCTATGGTGAGGTGCTCAACGCTTCAGTGATGAGGGATAAGAACACTGGCAAGCCCAGAGGCTTTGCCTTCGTTGAATTCGCGGATCCTTCAATTCTCGATAGGGTTCTTCAAGACAAGCATGTTATCGATGGAAGAACGGTTGATGCCAAGAAGGCCTTATCGAGAGAGGATCAGCAAATTTCTGGCTCATCCAGATCTGGAAATCCCACTTCAGGTTGGAATTCTGGAAATGGAGGAAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACAGAAGAAAAATTCCGCCAGTACTTTGAGTCATTTGGTCATGTAACTGATGTAGTAGTCATGTACGACCAGAATACTGGACGGCCACGTGGATTTGGTTTTATTTCTTTCGACTCTGAGGAGGCAGTTGATAGGGTTTTGTTCAAGTCATTTCATGATTTAAATGGTAAGCAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTTCAAGTGGCCGTGCTGGAGGTGGTGGTACTGGAGTTGGTGGTTACCAGGGGTATGGAGCATCTGGTGGGAACCAAAATGCTTATGATGGTCGTATGGATTCAAGTAGGTATATGCAGCCACAAAACACTGCAGGTGGATTCCCACCTTACGGTTCTTCTGGCTACAGTGCTGCTGGGTATGGGTATGGTCCTGCTAGTAATGGAATGGGTTACGGTGCATATGGAAGTTATGGAGGTGCTGCTGCTGGGTACGGTGGACCTGCTGGTGCAGCATACGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGGTGGTCAACCAGGTGGCCCGAGGAGTGCATGGCCTGCTCAGGCTCCCTCTGGTTATGGATCTATGGGCTATGGGAACGCTGCTCCATGGGGTGCTCCAAGTGGTGGTGCTGGTGCCGGGGCTGGTGGGCCTGGTTCAGCAACTTCAGGTCAATCTCCTAGTGGAGCTGCTGGATATGGGAATCAAGGATATGGATATGGTGGGTATGGTGGGGGTGATGGTTCTTATGGGAATCCAGGTGCATACGGTGCTGTCGGAGGGCGTACTGGGGGTGCCCCAAATAGTAATGCTAGTGGTGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGTGATGCTAATGGAAATTCTGGTTATGGAAATGCAGGCTGGAGATCTGACCAAGCTCAAGCATCTGGAAATTATGGGACTCCTCAGGGGTCTCATGGTGGGCAAGTTGGTTACGGTGGTGGCTATGGTGGTGCCCAGTCTTGA 1392 0.5007 MDSDQGKLFIGGISWDTTEDKLKDHFRSYGEVLNASVMRDKNTGKPRGFAFVEFADPSILDRVLQDKHVIDGRTVDAKKALSREDQQISGSSRSGNPTSGWNSGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESFGHVTDVVVMYDQNTGRPRGFGFISFDSEEAVDRVLFKSFHDLNGKQVEVKRALPKDANPGSSGRAGGGGTGVGGYQGYGASGGNQNAYDGRMDSSRYMQPQNTAGGFPPYGSSGYSAAGYGYGPASNGMGYGAYGSYGGAAAGYGGPAGAAYGNPNVANAAYAGGQPGGPRSAWPAQAPSGYGSMGYGNAAPWGAPSGGAGAGAGGPGSATSGQSPSGAAGYGNQGYGYGGYGGGDGSYGNPGAYGAVGGRTGGAPNSNASGGGSELQGSGGSGSYMGSGYGDANGNSGYGNAGWRSDQAQASGNYGTPQGSHGGQVGYGGGYGGAQS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1742 463 SMART rrm1_1 113 185 IPR000504 GO:0003723
Aev09g1742 463 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev09g1742 463 MobiDBLite consensus disorder prediction 391 447 - -
Aev09g1742 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 170 IPR000504 GO:0003723
Aev09g1742 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aev09g1742 463 MobiDBLite consensus disorder prediction 80 108 - -
Aev09g1742 463 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 462 - -
Aev09g1742 463 MobiDBLite consensus disorder prediction 220 240 - -
Aev09g1742 463 MobiDBLite consensus disorder prediction 84 108 - -
Aev09g1742 463 Gene3D - 111 228 IPR012677 -
Aev09g1742 463 Gene3D - 1 110 IPR012677 -
Aev09g1742 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Aev09g1742 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev09g1742 463 MobiDBLite consensus disorder prediction 185 205 - -
Aev09g1742 463 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Aev09g1742 463 MobiDBLite consensus disorder prediction 391 463 - -
Aev09g1742 463 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Aev09g1742 463 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aev09g1742 463 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g1742 Aev-Chr9 21356362 21358798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1742 8 188 Eukaryotic Initiation Factors Gene Family AT2G23350 21.538 4.35e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1742 K14411 - gmx:100811267 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g1742 09 21356362 21358798 Aev09g1742 09 21356362 21358798 ECH