Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1544 ATGGCGCACCGGCTGCTGAGGGACCATGAAGCCGACGGTTGGGAACGCTCCGACTTCCCCATCATCTGCGAGTCCTGCCTCGGCGACAACCCTTACGTTCGCATGACAAAGGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGACCTTTCACCGTTTTTAGATGGAGACCTGGTCGAGATGCAAGGTACAAGAAAACCGAGATCTGCCAGACATGTTGCAAATTGAAGAATGTGTGTCAAGTGTGCCTTCTGGATCTGGAATATGGACTTCCGGTTCAAGTTCGCGACACTGCTCTCAGTATCGATTCCAATGACGCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGATCGTAAGGCTAGAGCTGGTATAGATTATGAATCTTCGTTTGGTAAAGCACGACCAAATGATACTATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGTGCACACATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCAGAAACTGGGGAGCTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCTATGAAGCTACTTGGTAAGGCGGGAGAGATGACGTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATGGTGAAATTGAATCTGTCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTACACAACCAGAGAAGGTGCGGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATCAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCATCGAAACCGGAGTCAGATGGTTCTGATCAGGCAAGGCAGCAGCAGGCATCTGTGGCTCACAGCGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTACAACAATCCACCACCTCCTCCTCCTCAGCATGAAAGAAGCTATTACCCGTCAATGGACCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCTGGGGCAGGGGAGAACAATCCCAATTCGGAGAAGCAGCAAATGCAACACCATGCACATCCAATGATGCCTCCTCCTCCTCCTCCACATGGCCAATATCATCATCAGTATTATCCTCCTCCATACGGTTATATGCCACCGGTTCCCCCTTATCAGCAGTACCCACCACCATACAGTGCTGCAATGGGGCCACCGCCACCGCCAGCCGTAAATCATCCCTATCAGCATCATATGCAACCAGGGTCTTCACAATCGGGGTCTGCACAGGCTGGTTCTGGACCTGCGCCAACTGAAGCTGGAACATCAACCTCAGGGTCATAG 1461 0.4935 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSSKPESDGSDQARQQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPPPPQHERSYYPSMDPQRMGALIPSQEGPPGAGENNPNSEKQQMQHHAHPMMPPPPPPHGQYHHQYYPPPYGYMPPVPPYQQYPPPYSAAMGPPPPPAVNHPYQHHMQPGSSQSGSAQAGSGPAPTEAGTSTSGS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1544 486 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Aev09g1544 486 MobiDBLite consensus disorder prediction 400 415 - -
Aev09g1544 486 Gene3D - 212 342 IPR012677 -
Aev09g1544 486 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 460 IPR039171 GO:0003723
Aev09g1544 486 MobiDBLite consensus disorder prediction 430 486 - -
Aev09g1544 486 MobiDBLite consensus disorder prediction 456 486 - -
Aev09g1544 486 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Aev09g1544 486 SMART rrm1_1 229 297 IPR000504 GO:0003723
Aev09g1544 486 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Aev09g1544 486 MobiDBLite consensus disorder prediction 304 321 - -
Aev09g1544 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Aev09g1544 486 MobiDBLite consensus disorder prediction 382 396 - -
Aev09g1544 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Aev09g1544 486 Gene3D - 149 209 - -
Aev09g1544 486 MobiDBLite consensus disorder prediction 335 415 - -
Aev09g1544 486 CDD RRM_RBM22 227 300 - -
Aev09g1544 486 Pfam Torus domain 150 194 IPR032297 -
Aev09g1544 486 MobiDBLite consensus disorder prediction 430 453 - -
Aev09g1544 486 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Aev09g1544 486 MobiDBLite consensus disorder prediction 300 321 - -
Aev09g1544 486 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g1544 Aev-Chr9 19403406 19406826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1544 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 7.55e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1544 K12872 - gmx:100810440 753.051