Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1466 ATGTCGACATCATCTTCATCAACATCGCAATCGCACTTCACCTATTCCAACCCCTCCTCCTACTTCCCCGTTCCCTTCCACCTCCAGCAACCAGCTGCTGTCGCCACTGCCGCGCATTACGCCGCAGCACCGTACGCGGCGGCTCCGGCGGTGCAAATCCCCGCGACTCCTGTAATCGGTCCCGTCGCTCCTGCGCCAGTGGCCGGCGTTTACTCCGTGCCGCAATATCCGGCGCAGCAGTTATTTGAGAGGGATGCGCAGATGATAACGCCGGAGGCGCTGGAGAGTGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGCACAAGGCGGAGGCGAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGTCAAACCTGGGAGGATCCGATTCTTGCTGAATGGCCAGAAGATGACTATAGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTACAAAAGCATTTTCTCGGTTCCCTTCCTTTAACATGGCACGGGTTGTTAGAGATAAGCGGACGGGTAAAACAAAGGGTTATGGTTTCGTTAGCTTTGCCAATCCTTCTGATCTTGCTGCTGCGCTCAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAACTACGCAAGAGTAAGTGGAAGGAGAGGACAGATTATGAGGCCCTAGAAAAACAAAAGAATCAAACTCAGAAGAAACCAAAACTTCCCAGGAAGAGTATTTTGCACAAGTGA 744 0.5161 MSTSSSSTSQSHFTYSNPSSYFPVPFHLQQPAAVATAAHYAAAPYAAAPAVQIPATPVIGPVAPAPVAGVYSVPQYPAQQLFERDAQMITPEALESVKAAIASSEAEHKAEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQTQKKPKLPRKSILHK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1466 247 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 36 247 - -
Aev09g1466 247 MobiDBLite consensus disorder prediction 219 234 - -
Aev09g1466 247 SMART rrm1_1 140 213 IPR000504 GO:0003723
Aev09g1466 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Aev09g1466 247 PANTHER RNA-BINDING PROTEIN 42-LIKE 36 247 - -
Aev09g1466 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Aev09g1466 247 MobiDBLite consensus disorder prediction 219 247 - -
Aev09g1466 247 Gene3D - 83 233 IPR012677 -
Aev09g1466 247 SUPERFAMILY RNA-binding domain, RBD 123 219 IPR035979 GO:0003676
Aev09g1466 247 CDD RRM_RBM42 133 215 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g1466 Aev-Chr9 18688386 18692312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1466 141 228 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 2.03e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1466 K25079 - gmx:100807693 367.851