Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g1368 ATGCACCGCAAGGAACACGAGACCCAAGTCGAGGGCTTTCTAAGCCTTGTCACCACCAACGCAAATGCAAGTACTACCACAGTTGCTGGCGAGTTCAGTGGAAAACAGAGTTCTCTTGATGACTCGGAACGATTCTACATGAAACTCACTGACTTGTTGGAGTCCACTGGACTGAGCCTAATTTTCAATGTCCGAGAAACATTGCTGGATTTGTACCTTGTTTACTTGGAAGTGACTAGAAGAGGAGGATATCATCAGGTCGTTCAAGAAAAGAAATGGGGTGAAGTTGTCACTGCCCTGAAATTGGAAGGAAGTAGTGTAAAGTTATCTTCTCAGGTGGAACAGCTCTACGGACATCTTCTTTACAAATTCGAGCAATTGTACTTCTGCAGGGTTCCTGCTAAGCAAGCTGTAGCTAGCAGCACCAAAGGTCCAATCAAGAGGAAGCGTAATACACCGGGCAGTTACTTCTCTTGCCAAATGACAGGGGAAGCTGGGATTGTAGAAGAGCCGGTGCTTCTTCTACCAGCACCCTCCAATGACAAAGAAATGAAGAAACGTGGCGGTGCTCGACGCGGACTAAGGAACCCATACCAGATTTTCATCAAGCAGGAATGTGCTCGATTGAGAAGTTGTAATCACAGTAATCAGCCCTCAAACGGCACAACAGTCCTGCGAACTGCTATTGAAGCATGGAGAAAGATGTCTGAAACAGAGAAACAGCCATATGTGGAGGAAAGCAACAAGAACAAAGAAAGATTTAAGGAAGCAATGATTGCTGAAAACAAAGAGCACAATGCAAGGAAAGAGAAGATGCCTAGTATCTCTGGTGGTGATTACCGTGTAACTTCACAACCTGAGGCATATAACTACCCTGTCAATAAAGTATCAATTGACTTAGCTCTTAAAATGACTGAAAAAGCACCAAAGGATCCCTTGTTCCTGGTTGAATGGGACCGTTATTCCTCACTAGATTTGCCAACCAAGGAACAAAAGTAA 999 0.4444 MHRKEHETQVEGFLSLVTTNANASTTTVAGEFSGKQSSLDDSERFYMKLTDLLESTGLSLIFNVRETLLDLYLVYLEVTRRGGYHQVVQEKKWGEVVTALKLEGSSVKLSSQVEQLYGHLLYKFEQLYFCRVPAKQAVASSTKGPIKRKRNTPGSYFSCQMTGEAGIVEEPVLLLPAPSNDKEMKKRGGARRGLRNPYQIFIKQECARLRSCNHSNQPSNGTTVLRTAIEAWRKMSETEKQPYVEESNKNKERFKEAMIAENKEHNARKEKMPSISGGDYRVTSQPEAYNYPVNKVSIDLALKMTEKAPKDPLFLVEWDRYSSLDLPTKEQK* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g1368 332 Pfam ARID/BRIGHT DNA binding domain 42 125 IPR001606 GO:0003677
Aev09g1368 332 SMART hmgende2 190 263 IPR009071 -
Aev09g1368 332 SUPERFAMILY ARID-like 41 129 IPR036431 GO:0003677
Aev09g1368 332 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 191 262 IPR009071 -
Aev09g1368 332 Gene3D High mobility group box domain 177 276 IPR036910 -
Aev09g1368 332 Coils Coil 244 264 - -
Aev09g1368 332 ProSiteProfiles ARID domain profile. 39 129 IPR001606 GO:0003677
Aev09g1368 332 SMART ARID_2 36 125 - -
Aev09g1368 332 CDD HMGB-UBF_HMG-box 195 258 - -
Aev09g1368 332 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 20 319 - -
Aev09g1368 332 SUPERFAMILY HMG-box 183 260 IPR036910 -
Aev09g1368 332 Pfam HMG-box domain 192 258 IPR009071 -
Aev09g1368 332 SMART bright_3 40 130 IPR001606 GO:0003677
Aev09g1368 332 Gene3D - 21 147 IPR036431 GO:0003677
Aev09g1368 332 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 319 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g1368 69 145 ARID Transcription Factor Family AT1G76110 39.241 3.88e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aev09g1368 ARID 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g1368 - - var:108325455 303.908