Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0999 ATGGGTAGGCGGTCTAGTAGTCGCACAATTTATGTTGGCAATCTTCCTGGAGATATTCGCTTGAGAGAAGTAGAGGATATTTTCTACAAGTTTGGTCCAATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCAGGCTATGCCTTTGTGGAGTTTGAGGATCCTCGTGATGCTGACAATGCCATTTACTATCGAGATGGTTATGACTTTGATGGTTTTCGATTACGAGTTGAACTAGCACATGGTGGACGGGGTTATTCATCATCAGTAGACCGTCACAGTAATTATAGCGGTAGCAGTAGTAGCCGTGGGGTTTCGAGGCGTTCTGACTATCGTGTTCTTGTCACAGGATTACCTCCTTCAGCTTCATGGCAAGACCTAAAAGATCACATGCGCAGGGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGCATGACTGGAATCGTGGATTATACTAATTATGACGATATGAAATACGCTATCAGGAAACTTGATGACTCAGAATTTAGAAATGCCTTCTCTCGGTCGTACATACGGGTGAGGGAATATGACCGACGCAGTTATTCTAGGAGTCCTAGTTATGATTCAAGGAGGAGCTATTCAAGAAGCCCGAGCCGCAGTCCTTACATATCCCGAGGACGAAGCTGTAGTCGAAGTCCTAGCTATAGTGACAGGAGCAGAAGTTTCTCTCCAAAATCAAAGCACTTTCGGCGTTCATATTCAAGATCCCGGTCACAAACCAGATCGCCATATTTATCTCCTCGACCTCACGATACAGCCGCAGCCAAAGTCCTAGGAGCATGTAATAATCGCGTTCAGCTTCA 839 0.4541 MGRRSSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVEFEDPRDADNAIYYRDGYDFDGFRLRVELAHGGRGYSSSVDRHSNYSGSSSSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVREYDRRSYSRSPSYDSRRSYSRSPSRSPYISRGRSCSRSPSYSDRSRSFSPKSKHFRRSYSRSRSQTRSPYLSPRPHDTAAAKVLGACNNRVQL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0999 279 MobiDBLite consensus disorder prediction 198 232 - -
Aev09g0999 279 SMART rrm1_1 9 79 IPR000504 GO:0003723
Aev09g0999 279 SMART rrm1_1 113 184 IPR000504 GO:0003723
Aev09g0999 279 Gene3D - 2 111 IPR012677 -
Aev09g0999 279 MobiDBLite consensus disorder prediction 89 106 - -
Aev09g0999 279 CDD RRM2_SF2_plant_like 112 187 - -
Aev09g0999 279 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
Aev09g0999 279 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 4 256 - -
Aev09g0999 279 MobiDBLite consensus disorder prediction 193 262 - -
Aev09g0999 279 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 256 - -
Aev09g0999 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 77 IPR000504 GO:0003723
Aev09g0999 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Aev09g0999 279 MobiDBLite consensus disorder prediction 85 106 - -
Aev09g0999 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 83 IPR000504 GO:0003723
Aev09g0999 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Aev09g0999 279 Gene3D - 112 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0999 Aev-Chr9 11225509 11231673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0999 1 81 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 9.50e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0999 K12890 - gmx:100794282 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g0999 09 11225509 11231673 Aev09g0999 09 11225509 11231673 ECH